PlantSME Plant secondary metabolism enzyme database
PlantSME v1.0
PlantSME · Plant Secondary Metabolism Enzyme Database

Plant Secondary Metabolism Enzyme Family Database and Identification Platform

PlantSME supports browsing and identification of plant secondary metabolism enzyme families, with official libraries, job execution, result browsing, and deployment downloads.

Start Identification Open Tools Browse Species Lookup by Job ID
789Species 7Plant Lineages 6Pathways 105Families 1381989Candidate Genes 4734Species-Pathway Results
Public Database
Browse species, pathways, modules, enzyme families, and gene-level annotations in one place for result review and curation.
Toolbox
Access utilities including online identification, Job ID lookup, and batch ID mapping for common data search and result reuse workflows.
Integrated Identification Workflow
Online jobs run through unified official libraries and standard outputs, with results ready for in-site browsing and download.
Downloads & Deployment
Download the software package, official libraries, and deployment guidance for local reuse of the full identification workflow.
Pathway Coverage
Public annotations are concentrated in the following top-level pathways.
Terpenoid pathway 399969 28.94% Alkaloid pathway 307155 22.23% Phenylpropanoid pathway 290002 20.98% Flavonoid pathway 177505 12.84% Rosmarinic acid pathway 120436 8.71% Steroid pathway 86922 6.29%
More Pathways
Taxon Coverage
The collection spans multiple plant lineages and supports cross-lineage comparison.
Eudicots 495 62.74% Bryophytes 125 15.84% Monocots 117 14.83% Algae 29 3.68% Basal angiosperms 13 1.65% Gymnosperms 6 0.76% Other Lineages 4 0.51%
More Species
Species Count by Lineage
Species counts summarized by plant lineage; stacked segments show the annotation-member share of pathway modules within each lineage.
Open Species Page
Eudicots Open lineage species list
29.8%
22.29%
20.27%
495
Bryophytes Open lineage species list
23.96%
20.83%
26.01%
125
Monocots Open lineage species list
27.52%
22.47%
21.68%
117
Algae Open lineage species list
29.25%
24.27%
20.37%
29
Basal angiosperms Open lineage species list
30.51%
22.01%
20.88%
13
Gymnosperms Open lineage species list
27.41%
21.51%
23.98%
6
Lycophytes/Ferns Open lineage species list
25.77%
21.93%
23.95%
4
Terpenoid pathway 399969 28.94% Alkaloid pathway 307155 22.23% Phenylpropanoid pathway 290002 20.98% Flavonoid pathway 177505 12.84% Rosmarinic acid pathway 120436 8.71% Steroid pathway 86922 6.29%
Browse by Species
Inspect 789 species and compare their pathway and enzyme-family coverage.
Open Species Page
Triticum turgidum triticum_turgidum · Monocots
12552
Hordeum vulgare hordeum_vulgare · Monocots
11513
Aegilops tauschii aegilops_tauschii · Monocots
10755
Triticum aestivum triticum_aestivum · Monocots
8625
Fragaria ananassa fragaria_ananassa · Eudicots
6888
Prunus domestica prunus_domestica · Eudicots
6649
More Species +783
Browse by Pathway
The category node represents the real pathway name; continue below to inspect its functional modules and enzyme-step modules.
Open Pathway Page
Alkaloid pathway
Alkaloid pathway
Alkaloid pathway libraries imported from the 2026-05-17 portable BLAS…
Flavonoid pathway
Flavonoid pathway
Curated flavonoid biosynthesis catalog covering chalcone, flavanone, …
Phenylpropanoid pathway
Phenylpropanoid pathway
Phenylpropanoid pathway libraries imported from the 2026-05-17 portab…
Rosmarinic acid pathway
Rosmarinic acid pathway
Rosmarinic acid pathway libraries imported from the 2026-05-17 portab…
Steroid pathway
Steroid pathway
Steroid pathway libraries imported from the 2026-05-17 portable BLAST…
Terpenoid pathway
Terpenoid pathway
Terpenoid pathway libraries imported from the 2026-05-17 portable BLA…
More Pathways
Toolbox
Open the unified tool page for online identification, job lookup, sequence mapping, and primer design.
Protein ID Mapper
Choose one site species and submit protein FASTA queries to map them back to site gene records through best-hit search.
Primer Design
Generate lightweight routine PCR primer suggestions from user-provided DNA/CDS sequences.
Standard Workflow
The public site supports the complete loop from protein FASTA submission to result download for species-scale batch identification.
1Upload a protein FASTA file or complete proteome for one species
2Select the official pathway libraries to run
3Run the integrated identification workflow automatically
4Inspect hits on the result page and download the standard output bundle