PlantSME Plant secondary metabolism enzyme database

Alstonia scholaris (alstonia_scholaris)

Imported from atlas release summary for Alstonia scholaris.

2105
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.74% Alkaloid pathway 24.09% Phenylpropanoid pathway 21.57% Flavonoid pathway 12.07% Rosmarinic acid pathway 7.51% Steroid pathway 5.04%
Family Distribution
C4H 7.1% C3'H/CYP98A 5.48% UGT 4.77% BAHD 4.66% CYP76 4.31% 7DLGT 4.17% UFGT 3.44% POD 3.4%
Other Families 62.68%
More Families (94)
IFS 184 3.35% 4CL 165 3.0% NMT 138 2.51% T3O 137 2.49% F3H 128 2.33% F3'H/CYP75B 117 2.13% CAD 99 1.8% DWF4/CYP90B1 98 1.78% STR 95 1.73% BR6OX2/CYP85A2 95 1.73% CYP71 94 1.71% T16H 90 1.64% CODM/T6ODM 88 1.6% H6H 86 1.56% G8O/G8H 84 1.53% GS 76 1.38% TRI/TRII 68 1.24% FNS 67 1.22% SMT1/SMT2/SMT3 60 1.09% LAC 56 1.02% HCT 56 1.02% SGD 53 0.96% F3'5'H/CYP75A 53 0.96% F5H/CYP84A 53 0.96% CYP90D1 53 0.96% CSE 50 0.91% TPS 50 0.91% IO 49 0.89% IFR 49 0.89% CAS 44 0.8% COMT 43 0.78% GES 42 0.76% RAS 41 0.75% SLS 37 0.67% PYKS 37 0.67% BBE 33 0.6% TAT 33 0.6% NCS 32 0.58% ANS/LDOX 32 0.58% ANR 32 0.58% PMT 27 0.49% PAL 27 0.49% 8HGO 26 0.47% COR 26 0.47% CPD/CYP90A1 26 0.47% BR6OX1/CYP85A1 25 0.45% 7DLH 23 0.42% CYP51G1 20 0.36% CYP80B1 19 0.35% CCoAOMT 19 0.35% CNMT 18 0.33% CCR 18 0.33% DFR 16 0.29% CYP719 14 0.25% GGPPS 14 0.25% 16OMT 13 0.24% SQE 13 0.24% CPR 12 0.22% FPPS 12 0.22% AACT 12 0.22% SQS/FDFT1 11 0.2% XMT_MXMT_DXMT 10 0.18% LAMT 9 0.16% ROT3/CYP90C1 9 0.16% MPO 8 0.15% ISY 8 0.15% TYDC_DDC 8 0.15% FLS 8 0.15% CHS 8 0.15% DXS 8 0.15% CHI 7 0.13% MVK 7 0.13% MCT/IspD 6 0.11% ADC 5 0.09% SMO1/SMO2 5 0.09% MVD 5 0.09% CYP80F1 4 0.07% TDC 4 0.07% HPPR 4 0.07% DET2 4 0.07% HMGR 4 0.07% HYD1 3 0.05% HDR/IspH 3 0.05% 6OMT_4OMT_SOMT 2 0.04% FK 2 0.04% DWF1 2 0.04% CPI1 2 0.04% DWF5 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% HDS/IspG 2 0.04% DXR 2 0.04% DWF7 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 626 17 UGT (220) View species results
Alkaloid pathway 507 26 7DLGT (85) View species results
Phenylpropanoid pathway 454 13 POD (164) View species results
Flavonoid pathway 254 16 UFGT (152) View species results
Rosmarinic acid pathway 158 7 C4H (50) View species results
Steroid pathway 106 12 CAS (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2212 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 353 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
alstonia_scholaris_tjs30366 Alkaloid GS high pass
alstonia_scholaris_tjs30582 Alkaloid GS medium pass
alstonia_scholaris_tjs30816 Alkaloid GS medium pass
alstonia_scholaris_tjs30935 Alkaloid GS high pass
alstonia_scholaris_tjs31023 Alkaloid GS high pass
alstonia_scholaris_tjs31107 Alkaloid GS high pass
alstonia_scholaris_tjs31260 Alkaloid GS high pass
alstonia_scholaris_tjs31343 Alkaloid GS high pass
alstonia_scholaris_tjs31727 Alkaloid GS low borderline
alstonia_scholaris_tjs31956 Alkaloid GS high pass
alstonia_scholaris_tjs32418 Alkaloid GS medium pass
alstonia_scholaris_tjs32419 Alkaloid GS medium pass
alstonia_scholaris_tjs32420 Alkaloid GS high pass
alstonia_scholaris_tjs32438 Alkaloid GS high pass
alstonia_scholaris_tjs32654 Alkaloid GS high pass
alstonia_scholaris_tjs32655 Alkaloid GS high pass
alstonia_scholaris_tjs32657 Alkaloid GS medium pass
alstonia_scholaris_tjs32658 Alkaloid GS high pass
alstonia_scholaris_tjs32659 Alkaloid GS high pass
alstonia_scholaris_tjs32660 Alkaloid GS high pass
alstonia_scholaris_tjs32661 Alkaloid GS high pass
alstonia_scholaris_tjs32662.1 Alkaloid GS medium pass
alstonia_scholaris_tjs33253 Alkaloid GS low borderline
alstonia_scholaris_tjs33395 Alkaloid GS low borderline
alstonia_scholaris_tjs36016 Alkaloid GS low borderline
alstonia_scholaris_tjs36377 Alkaloid GS medium pass