Alstonia scholaris (alstonia_scholaris)
Imported from atlas release summary for Alstonia scholaris.
2105
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2105
Candidate Genes
C4H
7.1%
C3'H/CYP98A
5.48%
UGT
4.77%
BAHD
4.66%
CYP76
4.31%
7DLGT
4.17%
UFGT
3.44%
POD
3.4%
Other Families
62.68%
More Families (94)
IFS
184
3.35%
4CL
165
3.0%
NMT
138
2.51%
T3O
137
2.49%
F3H
128
2.33%
F3'H/CYP75B
117
2.13%
CAD
99
1.8%
DWF4/CYP90B1
98
1.78%
STR
95
1.73%
BR6OX2/CYP85A2
95
1.73%
CYP71
94
1.71%
T16H
90
1.64%
CODM/T6ODM
88
1.6%
H6H
86
1.56%
G8O/G8H
84
1.53%
GS
76
1.38%
TRI/TRII
68
1.24%
FNS
67
1.22%
SMT1/SMT2/SMT3
60
1.09%
LAC
56
1.02%
HCT
56
1.02%
SGD
53
0.96%
F3'5'H/CYP75A
53
0.96%
F5H/CYP84A
53
0.96%
CYP90D1
53
0.96%
CSE
50
0.91%
TPS
50
0.91%
IO
49
0.89%
IFR
49
0.89%
CAS
44
0.8%
COMT
43
0.78%
GES
42
0.76%
RAS
41
0.75%
SLS
37
0.67%
PYKS
37
0.67%
BBE
33
0.6%
TAT
33
0.6%
NCS
32
0.58%
ANS/LDOX
32
0.58%
ANR
32
0.58%
PMT
27
0.49%
PAL
27
0.49%
8HGO
26
0.47%
COR
26
0.47%
CPD/CYP90A1
26
0.47%
BR6OX1/CYP85A1
25
0.45%
7DLH
23
0.42%
CYP51G1
20
0.36%
CYP80B1
19
0.35%
CCoAOMT
19
0.35%
CNMT
18
0.33%
CCR
18
0.33%
DFR
16
0.29%
CYP719
14
0.25%
GGPPS
14
0.25%
16OMT
13
0.24%
SQE
13
0.24%
CPR
12
0.22%
FPPS
12
0.22%
AACT
12
0.22%
SQS/FDFT1
11
0.2%
XMT_MXMT_DXMT
10
0.18%
LAMT
9
0.16%
ROT3/CYP90C1
9
0.16%
MPO
8
0.15%
ISY
8
0.15%
TYDC_DDC
8
0.15%
FLS
8
0.15%
CHS
8
0.15%
DXS
8
0.15%
CHI
7
0.13%
MVK
7
0.13%
MCT/IspD
6
0.11%
ADC
5
0.09%
SMO1/SMO2
5
0.09%
MVD
5
0.09%
CYP80F1
4
0.07%
TDC
4
0.07%
HPPR
4
0.07%
DET2
4
0.07%
HMGR
4
0.07%
HYD1
3
0.05%
HDR/IspH
3
0.05%
6OMT_4OMT_SOMT
2
0.04%
FK
2
0.04%
DWF1
2
0.04%
CPI1
2
0.04%
DWF5
2
0.04%
HMGS
2
0.04%
MDS/IspF
2
0.04%
HDS/IspG
2
0.04%
DXR
2
0.04%
DWF7
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 626 | 17 | UGT (220) | View species results |
| Alkaloid pathway | 507 | 26 | 7DLGT (85) | View species results |
| Phenylpropanoid pathway | 454 | 13 | POD (164) | View species results |
| Flavonoid pathway | 254 | 16 | UFGT (152) | View species results |
| Rosmarinic acid pathway | 158 | 7 | C4H (50) | View species results |
| Steroid pathway | 106 | 12 | CAS (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2212 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 353 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| alstonia_scholaris_tjs26993 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| alstonia_scholaris_tjs28602 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| alstonia_scholaris_tjs28603 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| alstonia_scholaris_tjs29527 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| alstonia_scholaris_tjs30410 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| alstonia_scholaris_tjs30587 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| alstonia_scholaris_tjs32166 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| alstonia_scholaris_tjs32171 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| alstonia_scholaris_tjs32514 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| alstonia_scholaris_tjs32779 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| alstonia_scholaris_tjs34165 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| alstonia_scholaris_tjs34262 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| alstonia_scholaris_tjs34287 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| alstonia_scholaris_tjs34729 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| alstonia_scholaris_tjs35262 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| alstonia_scholaris_tjs36360 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| alstonia_scholaris_tjs36536 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| alstonia_scholaris_tjs36819 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |