PlantSME Plant secondary metabolism enzyme database

Amaranthus hypochondriacus (amaranthus_hypochondriacus)

Imported from atlas release summary for Amaranthus hypochondriacus.

1103
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.92% Phenylpropanoid pathway 22.48% Alkaloid pathway 21.76% Flavonoid pathway 13.42% Rosmarinic acid pathway 7.07% Steroid pathway 5.35%
Family Distribution
C4H 7.45% BAHD 5.85% POD 5.03% C3'H/CYP98A 4.8% 4CL 3.91% CYP76 3.8% UGT 3.76% 7DLGT 3.58%
Other Families 61.82%
More Families (95)
UFGT 95 3.54% NMT 90 3.35% IFS 77 2.87% T3O 66 2.46% F3H 66 2.46% F3'H/CYP75B 50 1.86% CODM/T6ODM 49 1.82% DWF4/CYP90B1 48 1.79% G8O/G8H 46 1.71% BR6OX2/CYP85A2 44 1.64% STR 38 1.42% CAD 38 1.42% SMT1/SMT2/SMT3 36 1.34% TPS 35 1.3% TRI/TRII 34 1.27% H6H 33 1.23% HCT 33 1.23% IFR 31 1.15% CAS 31 1.15% F3'5'H/CYP75A 30 1.12% RAS 30 1.12% PYKS 28 1.04% GES 28 1.04% CYP71 26 0.97% LAC 24 0.89% SLS 23 0.86% BBE 22 0.82% SGD 22 0.82% CSE 22 0.82% COMT 22 0.82% T16H 21 0.78% PMT 21 0.78% 7DLH 20 0.74% FNS 20 0.74% BR6OX1/CYP85A1 19 0.71% GS 18 0.67% IO 16 0.6% F5H/CYP84A 15 0.56% ANR 14 0.52% 16OMT 13 0.48% ANS/LDOX 12 0.45% CCR 12 0.45% CYP90D1 12 0.45% CPD/CYP90A1 11 0.41% DFR 10 0.37% PAL 9 0.34% TAT 9 0.34% CPR 9 0.34% FPPS 9 0.34% TYDC_DDC 7 0.26% TDC 7 0.26% 8HGO 7 0.26% XMT_MXMT_DXMT 7 0.26% CCoAOMT 7 0.26% HPPR 7 0.26% HYD1 7 0.26% AACT 7 0.26% GGPPS 7 0.26% NCS 6 0.22% CYP80B1 6 0.22% COR 6 0.22% LAMT 6 0.22% FLS 6 0.22% ROT3/CYP90C1 6 0.22% SQS/FDFT1 5 0.19% CNMT 4 0.15% MPO 4 0.15% ISY 4 0.15% CHS 4 0.15% CHI 4 0.15% DET2 4 0.15% CYP51G1 4 0.15% DWF7 4 0.15% HMGR 3 0.11% DXS 3 0.11% MVD 3 0.11% IDI 3 0.11% MVK 3 0.11% CPI1 2 0.07% SMO1/SMO2 2 0.07% SQE 2 0.07% MDS/IspF 2 0.07% HMGS 2 0.07% ADC 1 0.04% CYP80F1 1 0.04% CYP719 1 0.04% DWF1 1 0.04% FK 1 0.04% DWF5 1 0.04% HDS/IspG 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% PMK 1 0.04% MCT/IspD 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 330 19 BAHD (118) View species results
Phenylpropanoid pathway 248 12 POD (122) View species results
Alkaloid pathway 240 20 NMT (47) View species results
Flavonoid pathway 148 13 UFGT (88) View species results
Rosmarinic acid pathway 78 7 4CL (25) View species results
Steroid pathway 59 13 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 973 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 220 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
AMhypScaffold_60192500.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
AMhypScaffold_60192570.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
AMhypScaffold_70198750.1 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
AMhypScaffold_70209600.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
AMhypScaffold_90229460.1 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY