Amaranthus hypochondriacus (amaranthus_hypochondriacus)
Imported from atlas release summary for Amaranthus hypochondriacus.
1103
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1103
Candidate Genes
C4H
7.45%
BAHD
5.85%
POD
5.03%
C3'H/CYP98A
4.8%
4CL
3.91%
CYP76
3.8%
UGT
3.76%
7DLGT
3.58%
Other Families
61.82%
More Families (95)
UFGT
95
3.54%
NMT
90
3.35%
IFS
77
2.87%
T3O
66
2.46%
F3H
66
2.46%
F3'H/CYP75B
50
1.86%
CODM/T6ODM
49
1.82%
DWF4/CYP90B1
48
1.79%
G8O/G8H
46
1.71%
BR6OX2/CYP85A2
44
1.64%
STR
38
1.42%
CAD
38
1.42%
SMT1/SMT2/SMT3
36
1.34%
TPS
35
1.3%
TRI/TRII
34
1.27%
H6H
33
1.23%
HCT
33
1.23%
IFR
31
1.15%
CAS
31
1.15%
F3'5'H/CYP75A
30
1.12%
RAS
30
1.12%
PYKS
28
1.04%
GES
28
1.04%
CYP71
26
0.97%
LAC
24
0.89%
SLS
23
0.86%
BBE
22
0.82%
SGD
22
0.82%
CSE
22
0.82%
COMT
22
0.82%
T16H
21
0.78%
PMT
21
0.78%
7DLH
20
0.74%
FNS
20
0.74%
BR6OX1/CYP85A1
19
0.71%
GS
18
0.67%
IO
16
0.6%
F5H/CYP84A
15
0.56%
ANR
14
0.52%
16OMT
13
0.48%
ANS/LDOX
12
0.45%
CCR
12
0.45%
CYP90D1
12
0.45%
CPD/CYP90A1
11
0.41%
DFR
10
0.37%
PAL
9
0.34%
TAT
9
0.34%
CPR
9
0.34%
FPPS
9
0.34%
TYDC_DDC
7
0.26%
TDC
7
0.26%
8HGO
7
0.26%
XMT_MXMT_DXMT
7
0.26%
CCoAOMT
7
0.26%
HPPR
7
0.26%
HYD1
7
0.26%
AACT
7
0.26%
GGPPS
7
0.26%
NCS
6
0.22%
CYP80B1
6
0.22%
COR
6
0.22%
LAMT
6
0.22%
FLS
6
0.22%
ROT3/CYP90C1
6
0.22%
SQS/FDFT1
5
0.19%
CNMT
4
0.15%
MPO
4
0.15%
ISY
4
0.15%
CHS
4
0.15%
CHI
4
0.15%
DET2
4
0.15%
CYP51G1
4
0.15%
DWF7
4
0.15%
HMGR
3
0.11%
DXS
3
0.11%
MVD
3
0.11%
IDI
3
0.11%
MVK
3
0.11%
CPI1
2
0.07%
SMO1/SMO2
2
0.07%
SQE
2
0.07%
MDS/IspF
2
0.07%
HMGS
2
0.07%
ADC
1
0.04%
CYP80F1
1
0.04%
CYP719
1
0.04%
DWF1
1
0.04%
FK
1
0.04%
DWF5
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
DXR
1
0.04%
PMK
1
0.04%
MCT/IspD
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 330 | 19 | BAHD (118) | View species results |
| Phenylpropanoid pathway | 248 | 12 | POD (122) | View species results |
| Alkaloid pathway | 240 | 20 | NMT (47) | View species results |
| Flavonoid pathway | 148 | 13 | UFGT (88) | View species results |
| Rosmarinic acid pathway | 78 | 7 | 4CL (25) | View species results |
| Steroid pathway | 59 | 13 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 973 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 220 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| AMhypScaffold_50182480.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_70199450.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_70199460.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_70204360.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_70208820.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_80223830.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_90225350.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_90225360.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_90232730.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_90233160.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_90233990.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_90234950.1 | Alkaloid | CODM/T6ODM | medium | borderline |
| AMhypScaffold_10019330.1 | Alkaloid | COR | medium | pass |
| AMhypScaffold_120062710.1 | Alkaloid | COR | medium | pass |
| AMhypScaffold_120062720.1 | Alkaloid | COR | low | borderline |
| AMhypScaffold_30132620.1 | Alkaloid | COR | medium | pass |
| AMhypScaffold_70202540.1 | Alkaloid | COR | medium | pass |
| AMhypScaffold_70207520.1 | Alkaloid | COR | medium | pass |
| AMhypScaffold_80211820.1 | Alkaloid | CYP719 | medium | borderline |
| AMhypScaffold_100030360.1 | Alkaloid | CYP80B1 | medium | borderline |
| AMhypScaffold_110050510.1 | Alkaloid | CYP80B1 | medium | borderline |
| AMhypScaffold_20130010.1 | Alkaloid | CYP80B1 | medium | borderline |
| AMhypScaffold_40154370.1 | Alkaloid | CYP80B1 | medium | borderline |
| AMhypScaffold_40164850.1 | Alkaloid | CYP80B1 | medium | borderline |
| AMhypScaffold_80219360.1 | Alkaloid | CYP80B1 | medium | borderline |
| AMhypScaffold_30134320.1 | Alkaloid | CYP80F1 | medium | borderline |
| AMhypScaffold_100028750.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_100040020.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_10008930.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_10025630.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_10026580.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_110041030.1 | Alkaloid | G8O/G8H | low | borderline |
| AMhypScaffold_110042100.1 | Alkaloid | G8O/G8H | low | borderline |
| AMhypScaffold_120064420.1 | Alkaloid | G8O/G8H | low | borderline |
| AMhypScaffold_130069140.1 | Alkaloid | G8O/G8H | low | borderline |
| AMhypScaffold_140087900.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_140087920.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_150095450.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_150095460.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_150095470.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_150095480.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_150098200.1 | Alkaloid | G8O/G8H | low | borderline |
| AMhypScaffold_160105730.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_20112450.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_20112460.1 | Alkaloid | G8O/G8H | medium | pass |
| AMhypScaffold_20116830.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_20116890.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_20117890.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_20119730.1 | Alkaloid | G8O/G8H | medium | borderline |
| AMhypScaffold_20123340.1 | Alkaloid | G8O/G8H | medium | borderline |