PlantSME Plant secondary metabolism enzyme database

Brasenia schreberi (brasenia_schreberi)

Imported from atlas release summary for Brasenia schreberi.

2920
Candidate Protein Records
2195
Pathway-Level Records
5187
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Current group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.88% Phenylpropanoid pathway 24.33% Alkaloid pathway 18.36% Flavonoid pathway 12.8% Rosmarinic acid pathway 9.38% Steroid pathway 6.24%
Family Distribution
4CL 6.94% BAHD 6.23% POD 5.55% C3'H/CYP98A 4.86% C4H 4.68% UGT 4.03% 7DLGT 3.35% UFGT 3.32%
Other Families 61.04%
More Families (97)
CYP76 165 3.18% IFS 149 2.87% NMT 147 2.83% T3O 132 2.54% F3H 114 2.2% STR 102 1.97% CSE 97 1.87% DWF4/CYP90B1 93 1.79% BR6OX2/CYP85A2 93 1.79% SMT1/SMT2/SMT3 79 1.52% IFR 78 1.5% TRI/TRII 77 1.48% F3'H/CYP75B 76 1.47% PYKS 66 1.27% CYP71 60 1.16% CODM/T6ODM 59 1.14% H6H 58 1.12% LAC 58 1.12% CAD 56 1.08% PAL 51 0.98% GS 47 0.91% HCT 46 0.89% CAS 46 0.89% PMT 43 0.83% G8O/G8H 42 0.81% AACT 39 0.75% 7DLH 38 0.73% ANR 38 0.73% CCR 38 0.73% FNS 37 0.71% T16H 35 0.67% RAS 34 0.66% 8HGO 32 0.62% IO 30 0.58% SGD 30 0.58% SLS 30 0.58% COMT 30 0.58% CPD/CYP90A1 28 0.54% CNMT 26 0.5% F3'5'H/CYP75A 26 0.5% CYP90D1 26 0.5% DXS 24 0.46% TAT 23 0.44% GGPPS 22 0.42% DFR 21 0.4% CYP51G1 21 0.4% NCS 20 0.39% CPR 20 0.39% TPS 20 0.39% GES 19 0.37% CHS 19 0.37% F5H/CYP84A 19 0.37% SMO1/SMO2 19 0.37% 16OMT 18 0.35% BBE 17 0.33% FPPS 17 0.33% COR 16 0.31% ROT3/CYP90C1 14 0.27% HMGR 14 0.27% ANS/LDOX 13 0.25% BR6OX1/CYP85A1 13 0.25% MVK 13 0.25% HMGS 13 0.25% CCoAOMT 12 0.23% SQS/FDFT1 12 0.23% MVD 12 0.23% HDR/IspH 12 0.23% CYP719 11 0.21% MPO 10 0.19% CHI 10 0.19% DET2 10 0.19% CYP80B1 9 0.17% IDI 9 0.17% MCT/IspD 9 0.17% LAMT 8 0.15% SQE 8 0.15% ADC 7 0.13% HPPR 7 0.13% DWF5 6 0.12% MDS/IspF 6 0.12% TDC 5 0.1% FK 5 0.1% CPI1 5 0.1% GPPS 5 0.1% DXR 5 0.1% HDS/IspG 5 0.1% DWF7 4 0.08% HYD1 4 0.08% ISY 3 0.06% XMT_MXMT_DXMT 3 0.06% ODC 3 0.06% 6OMT_4OMT_SOMT 3 0.06% DWF1 3 0.06% CMK/IspE 3 0.06% TYDC_DDC 2 0.04% FLS 2 0.04% PMK 2 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 634 22 BAHD (224) View species results
Phenylpropanoid pathway 534 12 POD (243) View species results
Alkaloid pathway 403 23 NMT (71) View species results
Flavonoid pathway 281 12 UFGT (142) View species results
Rosmarinic acid pathway 206 7 4CL (72) View species results
Steroid pathway 137 12 SMT1/SMT2/SMT3 (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1605 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 403 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
brasenia_schreberi_Brsc29g0001.t1 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
brasenia_schreberi_Brsc29g0193.t1 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
brasenia_schreberi_Brsc29g0307.t2 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
brasenia_schreberi_Brsc30g1037.t1 Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
brasenia_schreberi_Brsc31g1103.t1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
brasenia_schreberi_Brsc32g511.t1 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
brasenia_schreberi_Brsc33g0253.t1 Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
brasenia_schreberi_Brsc35g0094.t1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
brasenia_schreberi_Brsc35g1532.t1 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
brasenia_schreberi_Brsc35g1572.t1 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC