Capsella grandiflora (capsella_grandiflora)
Imported from atlas release summary for Capsella grandiflora.
1223
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1223
Candidate Genes
C4H
6.35%
BAHD
6.02%
C3'H/CYP98A
5.82%
4CL
4.22%
CYP76
4.16%
POD
3.89%
IFS
3.76%
UGT
3.21%
Other Families
62.57%
More Families (95)
7DLGT
95
3.11%
UFGT
95
3.11%
F3H
94
3.08%
T3O
91
2.98%
NMT
89
2.91%
DWF4/CYP90B1
78
2.55%
F3'H/CYP75B
61
2.0%
BR6OX2/CYP85A2
61
2.0%
STR
60
1.96%
CODM/T6ODM
58
1.9%
SMT1/SMT2/SMT3
48
1.57%
CYP71
44
1.44%
SGD
41
1.34%
H6H
40
1.31%
CSE
40
1.31%
TRI/TRII
38
1.24%
IFR
33
1.08%
CAD
33
1.08%
T16H
32
1.05%
CAS
32
1.05%
G8O/G8H
28
0.92%
BBE
27
0.88%
F5H/CYP84A
27
0.88%
PYKS
26
0.85%
LAC
26
0.85%
TPS
26
0.85%
GES
24
0.79%
SLS
23
0.75%
ANR
21
0.69%
HCT
21
0.69%
IO
20
0.65%
CCR
20
0.65%
RAS
20
0.65%
CYP90D1
20
0.65%
BR6OX1/CYP85A1
20
0.65%
TAT
19
0.62%
FNS
18
0.59%
F3'5'H/CYP75A
18
0.59%
COMT
17
0.56%
CYP51G1
17
0.56%
GS
16
0.52%
LAMT
15
0.49%
CPD/CYP90A1
15
0.49%
16OMT
14
0.46%
7DLH
13
0.43%
ROT3/CYP90C1
12
0.39%
8HGO
11
0.36%
FPPS
11
0.36%
NCS
9
0.29%
PMT
9
0.29%
COR
9
0.29%
CNMT
9
0.29%
PAL
9
0.29%
SQE
9
0.29%
GGPPS
9
0.29%
MPO
8
0.26%
SMO1/SMO2
8
0.26%
AACT
8
0.26%
CPR
7
0.23%
SQS/FDFT1
7
0.23%
DFR
6
0.2%
ANS/LDOX
6
0.2%
CCoAOMT
6
0.2%
CYP719
5
0.16%
CYP80F1
5
0.16%
DWF7
5
0.16%
MCT/IspD
5
0.16%
DXS
5
0.16%
TYDC_DDC
4
0.13%
XMT_MXMT_DXMT
4
0.13%
CYP80B1
4
0.13%
CHI
4
0.13%
CHS
4
0.13%
HPPR
4
0.13%
MVK
4
0.13%
MVD
4
0.13%
DET2
3
0.1%
CMK/IspE
3
0.1%
TDC
2
0.07%
ISY
2
0.07%
ADC
2
0.07%
DWF1
2
0.07%
IDI
2
0.07%
FLS
1
0.03%
HYD1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
HMGR
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 360 | 19 | BAHD (152) | View species results |
| Alkaloid pathway | 278 | 18 | NMT (50) | View species results |
| Phenylpropanoid pathway | 259 | 12 | POD (113) | View species results |
| Flavonoid pathway | 142 | 8 | UFGT (89) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (37) | View species results |
| Steroid pathway | 85 | 12 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1208 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 225 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CAgraScaffold11050009430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold13990035010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold14510037050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold14510037050.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold14720038280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold15080040970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold159590047630.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold16420052290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold17420064020.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold17420064040.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold17420064050.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold17420064060.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold18890070850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold18890070850.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold21170083110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold21750085520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold22070087860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold22380090040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold22380090360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold2280092350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold23460094770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold23460094790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold23830097640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold23830097650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold25190106540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold30300123590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold34670133880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold40060148510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold4170153690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold42430155500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold43950159710.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold50170173460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold5580181760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold560182140.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold5700188250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold5780189240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold5780189240.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold5780189250.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold5780189260.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold5940190510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold59540190810.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold59540190810.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CAgraScaffold5960191390.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold6120194530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold6120194570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold66240201950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold6660203400.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold6660203470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold6900208300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CAgraScaffold7160213510.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |