PlantSME Plant secondary metabolism enzyme database

Capsella grandiflora (capsella_grandiflora)

Imported from atlas release summary for Capsella grandiflora.

1223
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.44% Alkaloid pathway 22.73% Phenylpropanoid pathway 21.18% Flavonoid pathway 11.61% Rosmarinic acid pathway 8.09% Steroid pathway 6.95%
Family Distribution
C4H 6.35% BAHD 6.02% C3'H/CYP98A 5.82% 4CL 4.22% CYP76 4.16% POD 3.89% IFS 3.76% UGT 3.21%
Other Families 62.57%
More Families (95)
7DLGT 95 3.11% UFGT 95 3.11% F3H 94 3.08% T3O 91 2.98% NMT 89 2.91% DWF4/CYP90B1 78 2.55% F3'H/CYP75B 61 2.0% BR6OX2/CYP85A2 61 2.0% STR 60 1.96% CODM/T6ODM 58 1.9% SMT1/SMT2/SMT3 48 1.57% CYP71 44 1.44% SGD 41 1.34% H6H 40 1.31% CSE 40 1.31% TRI/TRII 38 1.24% IFR 33 1.08% CAD 33 1.08% T16H 32 1.05% CAS 32 1.05% G8O/G8H 28 0.92% BBE 27 0.88% F5H/CYP84A 27 0.88% PYKS 26 0.85% LAC 26 0.85% TPS 26 0.85% GES 24 0.79% SLS 23 0.75% ANR 21 0.69% HCT 21 0.69% IO 20 0.65% CCR 20 0.65% RAS 20 0.65% CYP90D1 20 0.65% BR6OX1/CYP85A1 20 0.65% TAT 19 0.62% FNS 18 0.59% F3'5'H/CYP75A 18 0.59% COMT 17 0.56% CYP51G1 17 0.56% GS 16 0.52% LAMT 15 0.49% CPD/CYP90A1 15 0.49% 16OMT 14 0.46% 7DLH 13 0.43% ROT3/CYP90C1 12 0.39% 8HGO 11 0.36% FPPS 11 0.36% NCS 9 0.29% PMT 9 0.29% COR 9 0.29% CNMT 9 0.29% PAL 9 0.29% SQE 9 0.29% GGPPS 9 0.29% MPO 8 0.26% SMO1/SMO2 8 0.26% AACT 8 0.26% CPR 7 0.23% SQS/FDFT1 7 0.23% DFR 6 0.2% ANS/LDOX 6 0.2% CCoAOMT 6 0.2% CYP719 5 0.16% CYP80F1 5 0.16% DWF7 5 0.16% MCT/IspD 5 0.16% DXS 5 0.16% TYDC_DDC 4 0.13% XMT_MXMT_DXMT 4 0.13% CYP80B1 4 0.13% CHI 4 0.13% CHS 4 0.13% HPPR 4 0.13% MVK 4 0.13% MVD 4 0.13% DET2 3 0.1% CMK/IspE 3 0.1% TDC 2 0.07% ISY 2 0.07% ADC 2 0.07% DWF1 2 0.07% IDI 2 0.07% FLS 1 0.03% HYD1 1 0.03% FK 1 0.03% DWF5 1 0.03% CPI1 1 0.03% PMK 1 0.03% HMGR 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% MDS/IspF 1 0.03% HDR/IspH 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 360 19 BAHD (152) View species results
Alkaloid pathway 278 18 NMT (50) View species results
Phenylpropanoid pathway 259 12 POD (113) View species results
Flavonoid pathway 142 8 UFGT (89) View species results
Rosmarinic acid pathway 99 7 C4H (37) View species results
Steroid pathway 85 12 SMT1/SMT2/SMT3 (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1208 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 225 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
CAgraScaffold72130214210.1 Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
CAgraScaffold7920219920.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
CAgraScaffold840227870.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
CAgraScaffold8760232110.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
CAgraScaffold8760232120.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
CAgraScaffold8760232140.1 Alkaloid STR medium pass STR__00002__sp_P68175_STSY_RAUSE
CAgraScaffold9140237540.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
CAgraScaffold9260241060.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
CAgraScaffold9260241080.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
CAgraScaffold9260241090.1 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH