Capsella grandiflora (capsella_grandiflora)
Imported from atlas release summary for Capsella grandiflora.
1223
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1223
Candidate Genes
C4H
6.35%
BAHD
6.02%
C3'H/CYP98A
5.82%
4CL
4.22%
CYP76
4.16%
POD
3.89%
IFS
3.76%
UGT
3.21%
Other Families
62.57%
More Families (95)
7DLGT
95
3.11%
UFGT
95
3.11%
F3H
94
3.08%
T3O
91
2.98%
NMT
89
2.91%
DWF4/CYP90B1
78
2.55%
F3'H/CYP75B
61
2.0%
BR6OX2/CYP85A2
61
2.0%
STR
60
1.96%
CODM/T6ODM
58
1.9%
SMT1/SMT2/SMT3
48
1.57%
CYP71
44
1.44%
SGD
41
1.34%
H6H
40
1.31%
CSE
40
1.31%
TRI/TRII
38
1.24%
IFR
33
1.08%
CAD
33
1.08%
T16H
32
1.05%
CAS
32
1.05%
G8O/G8H
28
0.92%
BBE
27
0.88%
F5H/CYP84A
27
0.88%
PYKS
26
0.85%
LAC
26
0.85%
TPS
26
0.85%
GES
24
0.79%
SLS
23
0.75%
ANR
21
0.69%
HCT
21
0.69%
IO
20
0.65%
CCR
20
0.65%
RAS
20
0.65%
CYP90D1
20
0.65%
BR6OX1/CYP85A1
20
0.65%
TAT
19
0.62%
FNS
18
0.59%
F3'5'H/CYP75A
18
0.59%
COMT
17
0.56%
CYP51G1
17
0.56%
GS
16
0.52%
LAMT
15
0.49%
CPD/CYP90A1
15
0.49%
16OMT
14
0.46%
7DLH
13
0.43%
ROT3/CYP90C1
12
0.39%
8HGO
11
0.36%
FPPS
11
0.36%
NCS
9
0.29%
PMT
9
0.29%
COR
9
0.29%
CNMT
9
0.29%
PAL
9
0.29%
SQE
9
0.29%
GGPPS
9
0.29%
MPO
8
0.26%
SMO1/SMO2
8
0.26%
AACT
8
0.26%
CPR
7
0.23%
SQS/FDFT1
7
0.23%
DFR
6
0.2%
ANS/LDOX
6
0.2%
CCoAOMT
6
0.2%
CYP719
5
0.16%
CYP80F1
5
0.16%
DWF7
5
0.16%
MCT/IspD
5
0.16%
DXS
5
0.16%
TYDC_DDC
4
0.13%
XMT_MXMT_DXMT
4
0.13%
CYP80B1
4
0.13%
CHI
4
0.13%
CHS
4
0.13%
HPPR
4
0.13%
MVK
4
0.13%
MVD
4
0.13%
DET2
3
0.1%
CMK/IspE
3
0.1%
TDC
2
0.07%
ISY
2
0.07%
ADC
2
0.07%
DWF1
2
0.07%
IDI
2
0.07%
FLS
1
0.03%
HYD1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
HMGR
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 360 | 19 | BAHD (152) | View species results |
| Alkaloid pathway | 278 | 18 | NMT (50) | View species results |
| Phenylpropanoid pathway | 259 | 12 | POD (113) | View species results |
| Flavonoid pathway | 142 | 8 | UFGT (89) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (37) | View species results |
| Steroid pathway | 85 | 12 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1208 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 225 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CAgraScaffold2280092750.1 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| CAgraScaffold2280092760.1 | Terpenoid | UGT | medium | pass | UGT__00041__sp_K4GGT4_73C11_BARVU |
| CAgraScaffold2280092770.1 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| CAgraScaffold23000093300.1 | Terpenoid | UGT | medium | pass | UGT__00070__sp_Q5XF20_U84A1_ARATH |
| CAgraScaffold231210093990.1 | Terpenoid | UGT | low | borderline | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| CAgraScaffold261480110090.1 | Terpenoid | UGT | medium | pass | UGT__00112__sp_Q9ZQG4_U73B5_ARATH |
| CAgraScaffold26220110470.1 | Terpenoid | UGT | medium | pass | UGT__00094__sp_Q9LSY4_U71B8_ARATH |
| CAgraScaffold26220110480.1 | Terpenoid | UGT | medium | pass | UGT__00095__sp_Q9LSY6_U71B6_ARATH |
| CAgraScaffold26220110490.1 | Terpenoid | UGT | medium | pass | UGT__00094__sp_Q9LSY4_U71B8_ARATH |
| CAgraScaffold26220110520.1 | Terpenoid | UGT | medium | pass | UGT__00096__sp_Q9LSY8_U71B2_ARATH |
| CAgraScaffold26220110530.1 | Terpenoid | UGT | medium | pass | UGT__00097__sp_Q9LSY9_U71B1_ARATH |
| CAgraScaffold27930115840.1 | Terpenoid | UGT | medium | pass | UGT__00048__sp_O22182_U84B1_ARATH |
| CAgraScaffold27930115860.1 | Terpenoid | UGT | medium | pass | UGT__00048__sp_O22182_U84B1_ARATH |
| CAgraScaffold30121800.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| CAgraScaffold30121810.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| CAgraScaffold30121820.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| CAgraScaffold33660130860.1 | Terpenoid | UGT | medium | pass | UGT__00054__sp_O23406_U75D1_ARATH |
| CAgraScaffold33660130870.1 | Terpenoid | UGT | medium | pass | UGT__00054__sp_O23406_U75D1_ARATH |
| CAgraScaffold34740134430.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| CAgraScaffold35140136510.1 | Terpenoid | UGT | medium | pass | UGT__00094__sp_Q9LSY4_U71B8_ARATH |
| CAgraScaffold35140136620.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| CAgraScaffold38230145180.1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| CAgraScaffold4340158770.1 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| CAgraScaffold43420158800.1 | Terpenoid | UGT | medium | pass | UGT__00056__sp_O48715_U76D1_ARATH |
| CAgraScaffold4480163630.1 | Terpenoid | UGT | medium | pass | UGT__00080__sp_Q94AB5_U7E12_ARATH |
| CAgraScaffold4480163640.1 | Terpenoid | UGT | medium | pass | UGT__00080__sp_Q94AB5_U7E12_ARATH |
| CAgraScaffold4480163650.1 | Terpenoid | UGT | medium | pass | UGT__00099__sp_Q9LTH3_U76E1_ARATH |
| CAgraScaffold4480163660.1 | Terpenoid | UGT | medium | pass | UGT__00099__sp_Q9LTH3_U76E1_ARATH |
| CAgraScaffold4480163670.1 | Terpenoid | UGT | medium | pass | UGT__00099__sp_Q9LTH3_U76E1_ARATH |
| CAgraScaffold46220166010.1 | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| CAgraScaffold46220166030.1 | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| CAgraScaffold49090169690.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| CAgraScaffold49250170340.1 | Terpenoid | UGT | medium | pass | UGT__00080__sp_Q94AB5_U7E12_ARATH |
| CAgraScaffold51980175630.1 | Terpenoid | UGT | medium | pass | UGT__00070__sp_Q5XF20_U84A1_ARATH |
| CAgraScaffold5580181720.1 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| CAgraScaffold6050192410.1 | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| CAgraScaffold6120194170.1 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| CAgraScaffold6120194180.1 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| CAgraScaffold66170201710.1 | Terpenoid | UGT | medium | pass | UGT__00069__sp_Q0WW21_U75C1_ARATH |
| CAgraScaffold68650207710.1 | Terpenoid | UGT | medium | pass | UGT__00023__sp_B3TKC8_88F1G_MALDO |
| CAgraScaffold70550211860.1 | Terpenoid | UGT | medium | pass | UGT__00009__sp_A0A0G4DBR5_FG3N_SOYBN |
| CAgraScaffold71670214100.1 | Terpenoid | UGT | medium | pass | UGT__00077__sp_Q8VZE9_U73B1_ARATH |
| CAgraScaffold71670214110.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| CAgraScaffold71670214120.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| CAgraScaffold74870216530.1 | Terpenoid | UGT | medium | pass | UGT__00051__sp_O23382_U71B5_ARATH |
| CAgraScaffold8240224840.1 | Terpenoid | UGT | medium | pass | UGT__00076__sp_Q8L7M0_TUN_ARATH |
| CAgraScaffold84720229640.1 | Terpenoid | UGT | medium | pass | UGT__00051__sp_O23382_U71B5_ARATH |
| CAgraScaffold8760231990.1 | Terpenoid | UGT | medium | pass | UGT__00082__sp_Q9C9B0_U89B1_ARATH |