Capsella grandiflora (capsella_grandiflora)
Imported from atlas release summary for Capsella grandiflora.
1520
Candidate Protein Records
1223
Pathway-Level Records
3056
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3056
Family-Level Calls
C4H
6.35%
BAHD
6.02%
C3'H/CYP98A
5.82%
4CL
4.22%
CYP76
4.16%
POD
3.89%
IFS
3.76%
UGT
3.21%
Other Families
62.57%
More Families (95)
7DLGT
95
3.11%
UFGT
95
3.11%
F3H
94
3.08%
T3O
91
2.98%
NMT
89
2.91%
DWF4/CYP90B1
78
2.55%
F3'H/CYP75B
61
2.0%
BR6OX2/CYP85A2
61
2.0%
STR
60
1.96%
CODM/T6ODM
58
1.9%
SMT1/SMT2/SMT3
48
1.57%
CYP71
44
1.44%
SGD
41
1.34%
H6H
40
1.31%
CSE
40
1.31%
TRI/TRII
38
1.24%
IFR
33
1.08%
CAD
33
1.08%
T16H
32
1.05%
CAS
32
1.05%
G8O/G8H
28
0.92%
BBE
27
0.88%
F5H/CYP84A
27
0.88%
PYKS
26
0.85%
LAC
26
0.85%
TPS
26
0.85%
GES
24
0.79%
SLS
23
0.75%
ANR
21
0.69%
HCT
21
0.69%
IO
20
0.65%
CCR
20
0.65%
RAS
20
0.65%
CYP90D1
20
0.65%
BR6OX1/CYP85A1
20
0.65%
TAT
19
0.62%
FNS
18
0.59%
F3'5'H/CYP75A
18
0.59%
COMT
17
0.56%
CYP51G1
17
0.56%
GS
16
0.52%
LAMT
15
0.49%
CPD/CYP90A1
15
0.49%
16OMT
14
0.46%
7DLH
13
0.43%
ROT3/CYP90C1
12
0.39%
8HGO
11
0.36%
FPPS
11
0.36%
NCS
9
0.29%
PMT
9
0.29%
COR
9
0.29%
CNMT
9
0.29%
PAL
9
0.29%
SQE
9
0.29%
GGPPS
9
0.29%
MPO
8
0.26%
SMO1/SMO2
8
0.26%
AACT
8
0.26%
CPR
7
0.23%
SQS/FDFT1
7
0.23%
DFR
6
0.2%
ANS/LDOX
6
0.2%
CCoAOMT
6
0.2%
CYP719
5
0.16%
CYP80F1
5
0.16%
DWF7
5
0.16%
MCT/IspD
5
0.16%
DXS
5
0.16%
TYDC_DDC
4
0.13%
XMT_MXMT_DXMT
4
0.13%
CYP80B1
4
0.13%
CHI
4
0.13%
CHS
4
0.13%
HPPR
4
0.13%
MVK
4
0.13%
MVD
4
0.13%
DET2
3
0.1%
CMK/IspE
3
0.1%
TDC
2
0.07%
ISY
2
0.07%
ADC
2
0.07%
DWF1
2
0.07%
IDI
2
0.07%
FLS
1
0.03%
HYD1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
HMGR
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 360 | 19 | BAHD (152) | View species results |
| Alkaloid pathway | 278 | 18 | NMT (50) | View species results |
| Phenylpropanoid pathway | 259 | 12 | POD (113) | View species results |
| Flavonoid pathway | 142 | 8 | UFGT (89) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (37) | View species results |
| Steroid pathway | 85 | 12 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1208 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 225 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| CAgraScaffold21170083560.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold21170083570.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold21790086330.1 | Alkaloid | TRI/TRII | low | borderline |
| CAgraScaffold22400090930.1 | Alkaloid | TRI/TRII | low | borderline |
| CAgraScaffold24620101620.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold24620101620.2 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold24810103920.1 | Alkaloid | TRI/TRII | medium | borderline |
| CAgraScaffold25520107820.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold25520107820.2 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold3550139210.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold36510140420.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold41110152160.1 | Alkaloid | TRI/TRII | low | borderline |
| CAgraScaffold4450163080.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold54470179750.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold56410183480.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold5670185160.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold5670185180.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold59500190650.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold59500190660.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold59540190670.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold64560200810.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold64560200820.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold77600218920.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold85630230120.1 | Alkaloid | TRI/TRII | low | borderline |
| CAgraScaffold9930247600.1 | Alkaloid | TRI/TRII | medium | pass |
| CAgraScaffold12250018600.1 | Alkaloid | TYDC_DDC | medium | borderline |
| CAgraScaffold16290049740.1 | Alkaloid | TYDC_DDC | low | borderline |
| CAgraScaffold226660091910.1 | Alkaloid | TYDC_DDC | medium | borderline |
| CAgraScaffold226660091920.1 | Alkaloid | TYDC_DDC | medium | borderline |
| CAgraScaffold13980034750.1 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| CAgraScaffold19610074350.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| CAgraScaffold34490133590.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| CAgraScaffold87720232280.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |