Capsella grandiflora (capsella_grandiflora)
Imported from atlas release summary for Capsella grandiflora.
1223
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1223
Candidate Genes
C4H
6.35%
BAHD
6.02%
C3'H/CYP98A
5.82%
4CL
4.22%
CYP76
4.16%
POD
3.89%
IFS
3.76%
UGT
3.21%
Other Families
62.57%
More Families (95)
7DLGT
95
3.11%
UFGT
95
3.11%
F3H
94
3.08%
T3O
91
2.98%
NMT
89
2.91%
DWF4/CYP90B1
78
2.55%
F3'H/CYP75B
61
2.0%
BR6OX2/CYP85A2
61
2.0%
STR
60
1.96%
CODM/T6ODM
58
1.9%
SMT1/SMT2/SMT3
48
1.57%
CYP71
44
1.44%
SGD
41
1.34%
H6H
40
1.31%
CSE
40
1.31%
TRI/TRII
38
1.24%
IFR
33
1.08%
CAD
33
1.08%
T16H
32
1.05%
CAS
32
1.05%
G8O/G8H
28
0.92%
BBE
27
0.88%
F5H/CYP84A
27
0.88%
PYKS
26
0.85%
LAC
26
0.85%
TPS
26
0.85%
GES
24
0.79%
SLS
23
0.75%
ANR
21
0.69%
HCT
21
0.69%
IO
20
0.65%
CCR
20
0.65%
RAS
20
0.65%
CYP90D1
20
0.65%
BR6OX1/CYP85A1
20
0.65%
TAT
19
0.62%
FNS
18
0.59%
F3'5'H/CYP75A
18
0.59%
COMT
17
0.56%
CYP51G1
17
0.56%
GS
16
0.52%
LAMT
15
0.49%
CPD/CYP90A1
15
0.49%
16OMT
14
0.46%
7DLH
13
0.43%
ROT3/CYP90C1
12
0.39%
8HGO
11
0.36%
FPPS
11
0.36%
NCS
9
0.29%
PMT
9
0.29%
COR
9
0.29%
CNMT
9
0.29%
PAL
9
0.29%
SQE
9
0.29%
GGPPS
9
0.29%
MPO
8
0.26%
SMO1/SMO2
8
0.26%
AACT
8
0.26%
CPR
7
0.23%
SQS/FDFT1
7
0.23%
DFR
6
0.2%
ANS/LDOX
6
0.2%
CCoAOMT
6
0.2%
CYP719
5
0.16%
CYP80F1
5
0.16%
DWF7
5
0.16%
MCT/IspD
5
0.16%
DXS
5
0.16%
TYDC_DDC
4
0.13%
XMT_MXMT_DXMT
4
0.13%
CYP80B1
4
0.13%
CHI
4
0.13%
CHS
4
0.13%
HPPR
4
0.13%
MVK
4
0.13%
MVD
4
0.13%
DET2
3
0.1%
CMK/IspE
3
0.1%
TDC
2
0.07%
ISY
2
0.07%
ADC
2
0.07%
DWF1
2
0.07%
IDI
2
0.07%
FLS
1
0.03%
HYD1
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
HMGR
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 360 | 19 | BAHD (152) | View species results |
| Alkaloid pathway | 278 | 18 | NMT (50) | View species results |
| Phenylpropanoid pathway | 259 | 12 | POD (113) | View species results |
| Flavonoid pathway | 142 | 8 | UFGT (89) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (37) | View species results |
| Steroid pathway | 85 | 12 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1208 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 225 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CAgraScaffold19140071880.1 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| CAgraScaffold193700072590.1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| CAgraScaffold195720073630.1 | Terpenoid | BAHD | medium | pass | BAHD__00061__sp_Q8VYS8_ZDH24_ARATH |
| CAgraScaffold19680075290.1 | Terpenoid | BAHD | medium | pass | BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH |
| CAgraScaffold19680076070.1 | Terpenoid | BAHD | medium | pass | BAHD__00083__sp_Q9LMM0_GPAT4_ARATH |
| CAgraScaffold196960076690.1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| CAgraScaffold199400077500.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| CAgraScaffold20930080690.1 | Terpenoid | BAHD | medium | pass | BAHD__00094__sp_Q9SYC8_LPAT3_ARATH |
| CAgraScaffold20980081570.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| CAgraScaffold20980081710.1 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| CAgraScaffold2100082080.1 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| CAgraScaffold21170083530.1 | Terpenoid | BAHD | medium | pass | BAHD__00078__sp_Q9LHS7_GPAT7_ARATH |
| CAgraScaffold21710085150.1 | Terpenoid | BAHD | low | borderline | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| CAgraScaffold21790086000.1 | Terpenoid | BAHD | medium | pass | BAHD__00037__sp_Q3EBC2_ZDHC5_ARATH |
| CAgraScaffold21970087580.1 | Terpenoid | BAHD | medium | pass | BAHD__00089__sp_Q9SB58_ZDH19_ARATH |
| CAgraScaffold22130087930.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| CAgraScaffold22570091710.1 | Terpenoid | BAHD | medium | pass | BAHD__00069__sp_Q9C5W0_DGAT3_ARATH |
| CAgraScaffold228470093150.1 | Terpenoid | BAHD | medium | pass | BAHD__00002__sp_A0A068BIF1_AT9_ACTER |
| CAgraScaffold24200099610.1 | Terpenoid | BAHD | medium | pass | BAHD__00079__sp_Q9LIE4_ZDHC8_ARATH |
| CAgraScaffold2480102760.1 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| CAgraScaffold24890104090.1 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| CAgraScaffold24950104670.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| CAgraScaffold25150105190.1 | Terpenoid | BAHD | medium | pass | BAHD__00063__sp_Q93VV0_ZDHC6_ARATH |
| CAgraScaffold25190106430.1 | Terpenoid | BAHD | medium | pass | BAHD__00052__sp_Q8GWG0_GPAT9_ARATH |
| CAgraScaffold260109620.1 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| CAgraScaffold26130110030.1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| CAgraScaffold26130110040.1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| CAgraScaffold26250110900.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| CAgraScaffold26540112500.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| CAgraScaffold271340114060.1 | Terpenoid | BAHD | medium | pass | BAHD__00028__sp_O80467_SDT_ARATH |
| CAgraScaffold27140114070.1 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| CAgraScaffold28480117170.1 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| CAgraScaffold28480117170.2 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| CAgraScaffold28970118250.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| CAgraScaffold28970118260.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| CAgraScaffold28970118270.1 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| CAgraScaffold28970118280.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| CAgraScaffold28970118290.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| CAgraScaffold28970118300.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| CAgraScaffold28970118310.1 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| CAgraScaffold29250118910.1 | Terpenoid | BAHD | low | borderline | BAHD__00001__sp_A0A068BGA5_AT1_ACTDE |
| CAgraScaffold29910121470.1 | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| CAgraScaffold3010122340.1 | Terpenoid | BAHD | medium | pass | BAHD__00050__sp_Q6DR03_ZDHC3_ARATH |
| CAgraScaffold3010122450.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| CAgraScaffold31810127030.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| CAgraScaffold31810127040.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| CAgraScaffold3280128140.1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| CAgraScaffold3340128640.1 | Terpenoid | BAHD | medium | pass | BAHD__00084__sp_Q9M115_ZDH16_ARATH |
| CAgraScaffold3340128640.2 | Terpenoid | BAHD | medium | pass | BAHD__00084__sp_Q9M115_ZDH16_ARATH |
| CAgraScaffold3340128830.1 | Terpenoid | BAHD | medium | pass | BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH |