Carya illinoinensis (carya_illinoinensis)
Imported from atlas release summary for Carya illinoinensis.
1990
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1990
Candidate Genes
C3'H/CYP98A
6.6%
C4H
6.02%
BAHD
4.69%
CYP76
4.4%
IFS
4.16%
UGT
4.1%
7DLGT
3.97%
UFGT
3.91%
Other Families
62.14%
More Families (96)
T3O
187
3.83%
POD
165
3.38%
4CL
141
2.89%
F3H
137
2.81%
DWF4/CYP90B1
128
2.62%
CAD
109
2.23%
F3'H/CYP75B
101
2.07%
BR6OX2/CYP85A2
96
1.97%
CAS
88
1.8%
NMT
77
1.58%
CODM/T6ODM
77
1.58%
TPS
74
1.52%
STR
72
1.48%
GES
71
1.45%
TRI/TRII
64
1.31%
H6H
62
1.27%
LAC
59
1.21%
SMT1/SMT2/SMT3
59
1.21%
CYP71
59
1.21%
CYP90D1
57
1.17%
HCT
56
1.15%
COMT
49
1.0%
GS
44
0.9%
PYKS
43
0.88%
16OMT
42
0.86%
IFR
40
0.82%
T16H
37
0.76%
RAS
37
0.76%
ANR
36
0.74%
CSE
36
0.74%
TAT
36
0.74%
G8O/G8H
33
0.68%
BBE
32
0.66%
SGD
29
0.59%
PMT
29
0.59%
IO
28
0.57%
SLS
26
0.53%
8HGO
25
0.51%
CPD/CYP90A1
25
0.51%
LAMT
24
0.49%
CCR
24
0.49%
NCS
23
0.47%
BR6OX1/CYP85A1
23
0.47%
COR
21
0.43%
F3'5'H/CYP75A
21
0.43%
FNS
20
0.41%
PAL
18
0.37%
7DLH
17
0.35%
CNMT
16
0.33%
F5H/CYP84A
14
0.29%
ISY
13
0.27%
CHS
13
0.27%
CYP719
12
0.25%
MPO
12
0.25%
CCoAOMT
12
0.25%
DFR
11
0.23%
SQE
11
0.23%
GGPPS
10
0.2%
ROT3/CYP90C1
9
0.18%
ANS/LDOX
8
0.16%
CPR
8
0.16%
SQS/FDFT1
8
0.16%
HPPR
7
0.14%
CYP51G1
7
0.14%
AACT
7
0.14%
MVK
7
0.14%
TYDC_DDC
6
0.12%
DET2
6
0.12%
FPPS
6
0.12%
MVD
6
0.12%
CPI1
5
0.1%
DXS
5
0.1%
HMGR
5
0.1%
CYP80B1
4
0.08%
CYP80F1
4
0.08%
CHI
4
0.08%
SMO1/SMO2
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
PMK
3
0.06%
IDI
3
0.06%
ODC
2
0.04%
ADC
2
0.04%
TDC
2
0.04%
HYD1
2
0.04%
DWF7
2
0.04%
MCT/IspD
2
0.04%
CMK/IspE
2
0.04%
DXR
2
0.04%
MDS/IspF
2
0.04%
HMGS
2
0.04%
HDS/IspG
2
0.04%
XMT_MXMT_DXMT
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 578 | 20 | UGT (189) | View species results |
| Alkaloid pathway | 430 | 22 | 7DLGT (80) | View species results |
| Phenylpropanoid pathway | 408 | 11 | POD (162) | View species results |
| Flavonoid pathway | 264 | 10 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 172 | 7 | C4H (77) | View species results |
| Steroid pathway | 138 | 11 | CAS (70) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1922 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 322 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| carya_illinoinensis_Caril.01G072800.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.01G072900.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.01G079000.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.01G079500.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.01G079700.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.01G079800.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.01G080000.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.01G080100.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.03G166600.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.03G166900.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.03G167000.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.03G167200.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.03G167400.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.03G185200.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.04G123000.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.04G128300.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.04G128600.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.04G128700.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G088500.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G088600.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G088700.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G088800.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G203000.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G217400.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G217500.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.05G217700.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.06G028300.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.06G028400.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.06G028500.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.06G028600.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.06G028700.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.06G039300.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.09G064200.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.09G064300.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.10G053100.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.10G108300.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.10G108600.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.10G108800.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.11G097700.1.p | Alkaloid | 16OMT | low | borderline |
| carya_illinoinensis_Caril.12G072700.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.12G072800.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.12G072900.1.p | Alkaloid | 16OMT | medium | borderline |
| carya_illinoinensis_Caril.03G166700.1.p | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline |
| carya_illinoinensis_Caril.03G166800.1.p | Alkaloid | 6OMT_4OMT_SOMT | medium | pass |
| carya_illinoinensis_Caril.03G167100.1.p | Alkaloid | 6OMT_4OMT_SOMT | medium | borderline |
| carya_illinoinensis_Caril.01G032100.1.p | Alkaloid | 7DLGT | low | borderline |
| carya_illinoinensis_Caril.01G032200.1.p | Alkaloid | 7DLGT | medium | pass |
| carya_illinoinensis_Caril.01G032300.1.p | Alkaloid | 7DLGT | medium | pass |
| carya_illinoinensis_Caril.01G043600.1.p | Alkaloid | 7DLGT | low | borderline |
| carya_illinoinensis_Caril.01G043800.1.p | Alkaloid | 7DLGT | low | borderline |