PlantSME Plant secondary metabolism enzyme database

Castanea dentata (castanea_dentata)

/

Imported from atlas release summary for Castanea dentata.

2610
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.2% Alkaloid pathway 22.38% Phenylpropanoid pathway 17.66% Flavonoid pathway 15.59% Rosmarinic acid pathway 8.62% Steroid pathway 6.55%
Family Distribution
C3'H/CYP98A 6.27% C4H 6.15% UGT 5.86% 7DLGT 5.75% UFGT 5.73% BAHD 5.39% IFS 3.81% CYP76 3.76%
Other Families 57.28%
More Families (96)
T3O 216 3.64% POD 187 3.15% DWF4/CYP90B1 166 2.8% F3H 155 2.61% 4CL 144 2.43% F3'H/CYP75B 121 2.04% CAD 116 1.95% CAS 97 1.63% TRI/TRII 93 1.57% BR6OX2/CYP85A2 93 1.57% STR 85 1.43% CODM/T6ODM 84 1.42% SMT1/SMT2/SMT3 82 1.38% CYP71 79 1.33% LAC 74 1.25% H6H 72 1.21% NMT 68 1.15% HCT 66 1.11% CYP90D1 64 1.08% GS 58 0.98% TAT 58 0.98% GES 54 0.91% COMT 53 0.89% TPS 53 0.89% SGD 49 0.83% T16H 45 0.76% 7DLH 45 0.76% G8O/G8H 44 0.74% 16OMT 43 0.72% IFR 42 0.71% CSE 41 0.69% BR6OX1/CYP85A1 41 0.69% FNS 36 0.61% NCS 34 0.57% LAMT 33 0.56% BBE 33 0.56% IO 30 0.51% RAS 30 0.51% PYKS 29 0.49% F3'5'H/CYP75A 29 0.49% PMT 28 0.47% F5H/CYP84A 28 0.47% 8HGO 25 0.42% ANR 25 0.42% SLS 24 0.4% CPD/CYP90A1 21 0.35% CCR 20 0.34% COR 19 0.32% CYP51G1 19 0.32% PAL 18 0.3% ISY 16 0.27% CCoAOMT 13 0.22% HPPR 13 0.22% MPO 12 0.2% TYDC_DDC 12 0.2% DFR 12 0.2% CNMT 11 0.19% CYP719 11 0.19% GGPPS 10 0.17% ROT3/CYP90C1 8 0.13% FPPS 8 0.13% SQS/FDFT1 7 0.12% CHS 6 0.1% ANS/LDOX 6 0.1% TDC 5 0.08% CYP80B1 5 0.08% DET2 5 0.08% SMO1/SMO2 5 0.08% DXS 5 0.08% AACT 5 0.08% 6OMT_4OMT_SOMT 4 0.07% CPR 4 0.07% SQE 4 0.07% MVK 4 0.07% MCT/IspD 4 0.07% CYP80F1 3 0.05% CHI 3 0.05% HMGR 3 0.05% MVD 3 0.05% HDR/IspH 3 0.05% ODC 2 0.03% HYD1 2 0.03% CPI1 2 0.03% DXR 2 0.03% XMT_MXMT_DXMT 1 0.02% ADC 1 0.02% DWF7 1 0.02% DWF1 1 0.02% DWF5 1 0.02% FK 1 0.02% IDI 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% PMK 1 0.02% HMGS 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 762 19 UGT (329) View species results
Alkaloid pathway 584 21 7DLGT (165) View species results
Phenylpropanoid pathway 461 11 POD (173) View species results
Flavonoid pathway 407 9 UFGT (321) View species results
Rosmarinic acid pathway 225 7 C4H (99) View species results
Steroid pathway 171 13 CAS (89) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2278 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 416 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
Reset
Gene Pathway Family Confidence Status Best Target
castanea_dentata_Caden.01G397500.1.p Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
castanea_dentata_Caden.01G411500.1.p Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
castanea_dentata_Caden.01G411600.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
castanea_dentata_Caden.01G411800.1.p Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
castanea_dentata_Caden.01G411900.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
castanea_dentata_Caden.02G060600.1.p Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
castanea_dentata_Caden.02G064500.1.p Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
castanea_dentata_Caden.02G078100.1.p Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
castanea_dentata_Caden.02G078200.1.p Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
castanea_dentata_Caden.02G085100.1.p Terpenoid BAHD medium pass BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
castanea_dentata_Caden.02G123000.1.p Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
castanea_dentata_Caden.02G175100.1.p Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
castanea_dentata_Caden.02G188700.1.p Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
castanea_dentata_Caden.02G188800.1.p Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
castanea_dentata_Caden.02G188900.1.p Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
castanea_dentata_Caden.02G191400.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.02G215100.1.p Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
castanea_dentata_Caden.02G215300.1.p Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
castanea_dentata_Caden.02G250100.1.p Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
castanea_dentata_Caden.02G258900.1.p Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
castanea_dentata_Caden.03G022600.1.p Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
castanea_dentata_Caden.03G042600.1.p Terpenoid BAHD low borderline BAHD__00097__sp_Q9ZV87_NAPES_ARATH
castanea_dentata_Caden.03G066200.1.p Terpenoid BAHD medium pass BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
castanea_dentata_Caden.03G069000.1.p Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
castanea_dentata_Caden.03G079300.1.p Terpenoid BAHD low borderline BAHD__00012__sp_A1XWY7_CFAT_PETHY
castanea_dentata_Caden.03G089800.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G089900.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G090000.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G090400.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G090600.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G113100.1.p Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
castanea_dentata_Caden.03G113200.1.p Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
castanea_dentata_Caden.03G119500.1.p Terpenoid BAHD medium pass BAHD__00095__sp_Q9SZ58_BRAT1_ARATH
castanea_dentata_Caden.03G122800.1.p Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
castanea_dentata_Caden.03G132600.1.p Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
castanea_dentata_Caden.03G134500.1.p Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
castanea_dentata_Caden.03G136100.1.p Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
castanea_dentata_Caden.03G145600.1.p Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
castanea_dentata_Caden.03G150600.1.p Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
castanea_dentata_Caden.03G169400.1.p Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
castanea_dentata_Caden.03G169500.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G169600.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G169700.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G169800.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G169900.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G170000.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G170100.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G170200.1.p Terpenoid BAHD low borderline BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
castanea_dentata_Caden.03G170500.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
castanea_dentata_Caden.03G170700.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX