PlantSME Plant secondary metabolism enzyme database

Cicer arietinum (cicer_arietinum)

Imported from atlas release summary for Cicer arietinum.

1298
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.35% Alkaloid pathway 23.5% Phenylpropanoid pathway 21.57% Flavonoid pathway 14.1% Rosmarinic acid pathway 8.78% Steroid pathway 4.7%
Family Distribution
C4H 5.85% C3'H/CYP98A 5.81% BAHD 5.53% UGT 4.3% 4CL 4.27% 7DLGT 4.14% UFGT 4.14% POD 4.08%
Other Families 61.87%
More Families (96)
IFS 115 3.69% T3O 112 3.6% CYP76 107 3.44% F3H 89 2.86% NMT 71 2.28% DWF4/CYP90B1 67 2.15% CODM/T6ODM 61 1.96% STR 60 1.93% F3'H/CYP75B 49 1.57% BR6OX2/CYP85A2 47 1.51% H6H 43 1.38% SMT1/SMT2/SMT3 43 1.38% SGD 42 1.35% CYP71 39 1.25% RAS 38 1.22% HCT 35 1.12% CSE 34 1.09% PYKS 32 1.03% CAD 32 1.03% TRI/TRII 30 0.96% COMT 29 0.93% LAC 29 0.93% IFR 28 0.9% CAS 27 0.87% GS 25 0.8% CPD/CYP90A1 25 0.8% COR 24 0.77% TPS 24 0.77% GES 23 0.74% CYP90D1 23 0.74% PMT 22 0.71% 7DLH 21 0.67% FNS 21 0.67% CCR 21 0.67% CYP51G1 21 0.67% BBE 20 0.64% IO 20 0.64% ANR 19 0.61% T16H 18 0.58% 16OMT 18 0.58% F3'5'H/CYP75A 18 0.58% SLS 16 0.51% NCS 14 0.45% CNMT 14 0.45% BR6OX1/CYP85A1 14 0.45% ANS/LDOX 12 0.39% PAL 12 0.39% G8O/G8H 11 0.35% 8HGO 11 0.35% DFR 11 0.35% TAT 11 0.35% DWF1 10 0.32% LAMT 9 0.29% ROT3/CYP90C1 9 0.29% DXS 9 0.29% MPO 8 0.26% CHS 8 0.26% CCoAOMT 7 0.22% F5H/CYP84A 7 0.22% CPR 7 0.22% SQS/FDFT1 7 0.22% MVD 7 0.22% ISY 6 0.19% CHI 6 0.19% DET2 6 0.19% GGPPS 6 0.19% AACT 6 0.19% HPPR 5 0.16% CYP719 4 0.13% FLS 4 0.13% SQE 4 0.13% MCT/IspD 4 0.13% TDC 3 0.1% SMO1/SMO2 3 0.1% FPPS 3 0.1% HMGR 3 0.1% MVK 3 0.1% TYDC_DDC 2 0.06% CPI1 2 0.06% HDR/IspH 2 0.06% DXR 2 0.06% HMGS 2 0.06% CYP80F1 1 0.03% CYP80B1 1 0.03% XMT_MXMT_DXMT 1 0.03% ODC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% ADC 1 0.03% DWF7 1 0.03% FK 1 0.03% DWF5 1 0.03% HYD1 1 0.03% HDS/IspG 1 0.03% IDI 1 0.03% CMK/IspE 1 0.03% PMK 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 355 18 BAHD (138) View species results
Alkaloid pathway 305 20 7DLGT (68) View species results
Phenylpropanoid pathway 280 11 POD (122) View species results
Flavonoid pathway 183 10 UFGT (123) View species results
Rosmarinic acid pathway 114 7 C4H (47) View species results
Steroid pathway 61 13 SMT1/SMT2/SMT3 (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1108 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 245 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cariscaffold1348_10008270.1 Alkaloid T3O medium borderline
Cariscaffold1348_10009080.1 Alkaloid T3O medium borderline
Cariscaffold13820009970.1 Alkaloid T3O medium borderline
Cariscaffold14670011140.1 Alkaloid T3O medium borderline
Cariscaffold1570012450.1 Alkaloid T3O low borderline
Cariscaffold1670013980.1 Alkaloid T3O low borderline
Cariscaffold20400018950.1 Alkaloid T3O medium borderline
Cariscaffold21700020350.1 Alkaloid T3O low borderline
Cariscaffold27340024200.1 Alkaloid T3O medium borderline
Cariscaffold27340024210.1 Alkaloid T3O medium borderline
Cariscaffold27340024220.1 Alkaloid T3O medium borderline
Cariscaffold79230046130.1 Alkaloid T3O low borderline