PlantSME Plant secondary metabolism enzyme database

Citrus australis (citrus_australis)

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Imported from atlas release summary for Citrus australis.

1683
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.77% Alkaloid pathway 24.9% Phenylpropanoid pathway 22.1% Flavonoid pathway 10.28% Rosmarinic acid pathway 6.77% Steroid pathway 6.18%
Family Distribution
BAHD 5.18% C4H 5.16% C3'H/CYP98A 4.88% UGT 4.54% CYP76 3.9% POD 3.67% NMT 3.62% 7DLGT 3.39%
Other Families 65.66%
More Families (97)
4CL 132 3.39% UFGT 118 3.03% IFS 114 2.93% F3H 86 2.21% DWF4/CYP90B1 84 2.16% TPS 83 2.13% COMT 81 2.08% T3O 75 1.93% CAS 71 1.82% GES 70 1.8% F3'H/CYP75B 69 1.77% STR 66 1.69% BR6OX2/CYP85A2 63 1.62% CODM/T6ODM 60 1.54% CAD 57 1.46% T16H 56 1.44% TRI/TRII 52 1.33% G8O/G8H 50 1.28% H6H 48 1.23% HCT 44 1.13% SMT1/SMT2/SMT3 42 1.08% PYKS 40 1.03% F3'5'H/CYP75A 39 1.0% IFR 37 0.95% RAS 37 0.95% GS 35 0.9% SGD 32 0.82% FNS 32 0.82% F5H/CYP84A 32 0.82% LAC 30 0.77% CSE 30 0.77% CYP90D1 29 0.74% ANR 28 0.72% ANS/LDOX 27 0.69% 16OMT 26 0.67% IO 26 0.67% NCS 26 0.67% CYP71 26 0.67% CCR 25 0.64% TAT 25 0.64% 7DLH 24 0.62% PAL 24 0.62% GGPPS 23 0.59% ISY 22 0.56% CPD/CYP90A1 22 0.56% 8HGO 21 0.54% CYP80B1 20 0.51% COR 20 0.51% CHS 18 0.46% CNMT 17 0.44% SLS 16 0.41% PMT 15 0.39% LAMT 13 0.33% HPPR 12 0.31% TYDC_DDC 11 0.28% DFR 11 0.28% ROT3/CYP90C1 11 0.28% XMT_MXMT_DXMT 10 0.26% CCoAOMT 10 0.26% FPPS 10 0.26% MPO 9 0.23% AACT 9 0.23% 6OMT_4OMT_SOMT 7 0.18% CYP719 7 0.18% SQE 7 0.18% BR6OX1/CYP85A1 6 0.15% SQS/FDFT1 6 0.15% DXS 6 0.15% BBE 5 0.13% CPR 5 0.13% MVK 5 0.13% CHI 4 0.1% FLS 4 0.1% HYD1 4 0.1% CYP51G1 4 0.1% MVD 4 0.1% ODC 3 0.08% TDC 2 0.05% SMO1/SMO2 2 0.05% DWF7 2 0.05% DET2 2 0.05% MCT/IspD 2 0.05% HMGR 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% HMGS 2 0.05% HDR/IspH 2 0.05% ADC 1 0.03% DWF5 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF1 1 0.03% CMK/IspE 1 0.03% PMK 1 0.03% IDI 1 0.03% GPPS 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 501 18 BAHD (160) View species results
Alkaloid pathway 419 28 NMT (69) View species results
Phenylpropanoid pathway 372 12 POD (131) View species results
Flavonoid pathway 173 11 UFGT (91) View species results
Rosmarinic acid pathway 114 7 4CL (32) View species results
Steroid pathway 104 13 CAS (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1316 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
citrus_australis_GWHPBQDX024872 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX027489 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX027490 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX027975 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
citrus_australis_GWHPBQDX028387 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX028388 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX029448 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX029449 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX029450 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX030918 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
citrus_australis_GWHPBQDX030919 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
citrus_australis_GWHPBQDX030920 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
citrus_australis_GWHPBQDX031146 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX031150 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX031811 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
citrus_australis_GWHPBQDX031812 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR