PlantSME Plant secondary metabolism enzyme database

Conocephalum conicum (conocephalum_conicum)

Imported from atlas release summary for Conocephalum conicum.

647
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 36.79% Terpenoid pathway 21.17% Alkaloid pathway 18.86% Flavonoid pathway 10.2% Rosmarinic acid pathway 7.42% Steroid pathway 5.56%
Family Distribution
POD 9.5% C4H 8.09% C3'H/CYP98A 6.39% CYP76 4.64% BAHD 4.19% T3O 3.11% 4CL 3.05% NMT 2.83%
Other Families 58.2%
More Families (97)
IFS 46 2.6% BR6OX2/CYP85A2 43 2.43% DWF4/CYP90B1 39 2.21% UGT 38 2.15% 7DLGT 36 2.04% STR 36 2.04% UFGT 35 1.98% F3'H/CYP75B 33 1.87% F3'5'H/CYP75A 31 1.75% PAL 30 1.7% F3H 29 1.64% CSE 28 1.58% TRI/TRII 24 1.36% HCT 23 1.3% IFR 21 1.19% CODM/T6ODM 20 1.13% H6H 20 1.13% G8O/G8H 20 1.13% RAS 20 1.13% FNS 19 1.07% TPS 18 1.02% T16H 17 0.96% CAS 17 0.96% PYKS 15 0.85% GS 15 0.85% CAD 14 0.79% CYP71 14 0.79% CHS 13 0.74% SMT1/SMT2/SMT3 13 0.74% BR6OX1/CYP85A1 13 0.74% COR 11 0.62% IO 11 0.62% CYP719 11 0.62% SLS 10 0.57% 7DLH 10 0.57% ANS/LDOX 10 0.57% F5H/CYP84A 10 0.57% ANR 9 0.51% COMT 9 0.51% TAT 9 0.51% CYP80B1 8 0.45% PMT 8 0.45% NCS 8 0.45% CCR 8 0.45% CYP90D1 8 0.45% CPD/CYP90A1 8 0.45% GES 7 0.4% CNMT 7 0.4% LAMT 6 0.34% CYP51G1 6 0.34% DET2 6 0.34% 8HGO 5 0.28% DFR 5 0.28% CPR 5 0.28% ROT3/CYP90C1 5 0.28% AACT 5 0.28% SGD 4 0.23% BBE 4 0.23% FLS 4 0.23% SQS/FDFT1 4 0.23% GGPPS 4 0.23% FPPS 4 0.23% TYDC_DDC 3 0.17% 6OMT_4OMT_SOMT 3 0.17% LAC 3 0.17% CCoAOMT 3 0.17% DWF1 3 0.17% MVK 3 0.17% XMT_MXMT_DXMT 2 0.11% 16OMT 2 0.11% ISY 2 0.11% MPO 2 0.11% CYP80F1 2 0.11% CHI 2 0.11% SMO1/SMO2 2 0.11% DXS 2 0.11% MCT/IspD 2 0.11% MVD 2 0.11% DXR 2 0.11% HMGR 2 0.11% HMGS 2 0.11% ADC 1 0.06% TDC 1 0.06% ODC 1 0.06% HPPR 1 0.06% HYD1 1 0.06% DWF7 1 0.06% CPI1 1 0.06% SQE 1 0.06% DWF5 1 0.06% FK 1 0.06% HDS/IspG 1 0.06% HDR/IspH 1 0.06% CMK/IspE 1 0.06% IDI 1 0.06% PMK 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 238 11 POD (162) View species results
Terpenoid pathway 137 19 BAHD (40) View species results
Alkaloid pathway 122 20 T3O (28) View species results
Flavonoid pathway 66 8 UFGT (32) View species results
Rosmarinic acid pathway 48 7 C4H (22) View species results
Steroid pathway 36 11 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 738 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 117 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
Reset
Gene Pathway Family Confidence Status
Cconscaffold_50105740 Steroid ROT3/CYP90C1 medium borderline
Cconscaffold_50116480 Steroid ROT3/CYP90C1 medium borderline
Cconscaffold_60144860 Steroid ROT3/CYP90C1 medium borderline
Cconscaffold_10019350 Steroid SMO1/SMO2 medium pass
Cconscaffold_70158080 Steroid SMO1/SMO2 medium pass
Cconscaffold_10005500 Steroid SMT1/SMT2/SMT3 low borderline
Cconscaffold_10007100 Steroid SMT1/SMT2/SMT3 low borderline
Cconscaffold_10008680 Steroid SMT1/SMT2/SMT3 low borderline
Cconscaffold_20037070 Steroid SMT1/SMT2/SMT3 low borderline
Cconscaffold_30046440 Steroid SMT1/SMT2/SMT3 low borderline
Cconscaffold_30051690 Steroid SMT1/SMT2/SMT3 low borderline
Cconscaffold_30052880 Steroid SMT1/SMT2/SMT3 medium pass
Cconscaffold_30062570 Steroid SMT1/SMT2/SMT3 medium pass
Cconscaffold_40084980 Steroid SMT1/SMT2/SMT3 medium pass
Cconscaffold_40094290 Steroid SMT1/SMT2/SMT3 medium pass
Cconscaffold_40096150 Steroid SMT1/SMT2/SMT3 low borderline
Cconscaffold_40098830 Steroid SMT1/SMT2/SMT3 medium pass
Cconscaffold_50113660 Steroid SMT1/SMT2/SMT3 medium pass
Cconscaffold_50106980 Steroid SQE medium pass
Cconscaffold_10018390 Steroid SQS/FDFT1 high pass
Cconscaffold_10020380 Steroid SQS/FDFT1 medium pass
Cconscaffold_30047900 Steroid SQS/FDFT1 medium pass
Cconscaffold_40096290 Steroid SQS/FDFT1 low borderline