Cucurbita argyrosperma (cucurbita_argyrosperma)
Imported from atlas release summary for Cucurbita argyrosperma.
814
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
814
Candidate Genes
BAHD
7.43%
4CL
5.57%
POD
5.43%
C4H
5.14%
C3'H/CYP98A
4.57%
NMT
4.0%
IFS
3.47%
CYP76
3.43%
Other Families
60.97%
More Families (93)
F3H
58
2.76%
UGT
58
2.76%
T3O
53
2.52%
7DLGT
52
2.48%
UFGT
50
2.38%
STR
45
2.14%
DWF4/CYP90B1
44
2.09%
CODM/T6ODM
41
1.95%
SMT1/SMT2/SMT3
39
1.86%
IFR
33
1.57%
BR6OX2/CYP85A2
31
1.48%
CSE
29
1.38%
H6H
28
1.33%
LAC
27
1.29%
CAD
27
1.29%
PYKS
26
1.24%
F3'H/CYP75B
24
1.14%
CAS
22
1.05%
GS
20
0.95%
CYP71
20
0.95%
IO
19
0.9%
CCR
19
0.9%
TRI/TRII
18
0.86%
HCT
18
0.86%
TAT
18
0.86%
PMT
17
0.81%
RAS
17
0.81%
NCS
16
0.76%
G8O/G8H
16
0.76%
ANS/LDOX
16
0.76%
CNMT
14
0.67%
F3'5'H/CYP75A
14
0.67%
ANR
14
0.67%
T16H
13
0.62%
FNS
13
0.62%
CYP90D1
13
0.62%
8HGO
12
0.57%
SGD
12
0.57%
BR6OX1/CYP85A1
11
0.52%
SLS
10
0.48%
F5H/CYP84A
10
0.48%
BBE
9
0.43%
CPR
9
0.43%
CPD/CYP90A1
9
0.43%
TPS
9
0.43%
7DLH
8
0.38%
GES
8
0.38%
SQS/FDFT1
8
0.38%
MVK
8
0.38%
AACT
8
0.38%
CYP719
7
0.33%
DFR
7
0.33%
MVD
7
0.33%
FPPS
7
0.33%
COR
6
0.29%
MPO
6
0.29%
CHS
6
0.29%
COMT
6
0.29%
DET2
6
0.29%
SQE
6
0.29%
ROT3/CYP90C1
6
0.29%
ISY
5
0.24%
CCoAOMT
5
0.24%
HPPR
5
0.24%
CYP51G1
5
0.24%
DWF1
5
0.24%
GGPPS
5
0.24%
DXS
5
0.24%
HMGR
5
0.24%
TYDC_DDC
4
0.19%
CYP80B1
4
0.19%
SMO1/SMO2
4
0.19%
PMK
4
0.19%
LAMT
3
0.14%
16OMT
3
0.14%
CHI
3
0.14%
CMK/IspE
3
0.14%
MCT/IspD
3
0.14%
IDI
3
0.14%
TDC
2
0.1%
ADC
2
0.1%
FK
2
0.1%
CPI1
2
0.1%
DWF7
2
0.1%
HYD1
2
0.1%
MDS/IspF
2
0.1%
HDS/IspG
2
0.1%
HDR/IspH
2
0.1%
HMGS
2
0.1%
ODC
1
0.05%
FLS
1
0.05%
DWF5
1
0.05%
DXR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 255 | 19 | BAHD (118) | View species results |
| Phenylpropanoid pathway | 204 | 10 | POD (104) | View species results |
| Alkaloid pathway | 155 | 19 | NMT (39) | View species results |
| Flavonoid pathway | 82 | 7 | UFGT (45) | View species results |
| Rosmarinic acid pathway | 59 | 6 | 4CL (18) | View species results |
| Steroid pathway | 59 | 12 | CAS (18) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 666 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 191 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CargCucurbita_argyrosperma_scaffold_1230194750.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| CargCucurbita_argyrosperma_scaffold_1280197760.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| CargCucurbita_argyrosperma_scaffold_1370205140.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| CargCucurbita_argyrosperma_scaffold_1440208900.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| CargCucurbita_argyrosperma_scaffold_1490211530.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| CargCucurbita_argyrosperma_scaffold_1640219480.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| CargCucurbita_argyrosperma_scaffold_1660220060.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| CargCucurbita_argyrosperma_scaffold_1740224920.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| CargCucurbita_argyrosperma_scaffold_1820229610.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| CargCucurbita_argyrosperma_scaffold_2040237070.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| CargCucurbita_argyrosperma_scaffold_2090239450.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| CargCucurbita_argyrosperma_scaffold_2090239510.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| CargCucurbita_argyrosperma_scaffold_2130240690.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| CargCucurbita_argyrosperma_scaffold_2430248690.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| CargCucurbita_argyrosperma_scaffold_2650253570.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| CargCucurbita_argyrosperma_scaffold_2800256860.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| CargCucurbita_argyrosperma_scaffold_3240264410.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |