Cucurbita argyrosperma (cucurbita_argyrosperma)
Imported from atlas release summary for Cucurbita argyrosperma.
1198
Candidate Protein Records
814
Pathway-Level Records
2101
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2101
Family-Level Calls
BAHD
7.43%
4CL
5.57%
POD
5.43%
C4H
5.14%
C3'H/CYP98A
4.57%
NMT
4.0%
IFS
3.47%
CYP76
3.43%
Other Families
60.97%
More Families (93)
F3H
58
2.76%
UGT
58
2.76%
T3O
53
2.52%
7DLGT
52
2.48%
UFGT
50
2.38%
STR
45
2.14%
DWF4/CYP90B1
44
2.09%
CODM/T6ODM
41
1.95%
SMT1/SMT2/SMT3
39
1.86%
IFR
33
1.57%
BR6OX2/CYP85A2
31
1.48%
CSE
29
1.38%
H6H
28
1.33%
LAC
27
1.29%
CAD
27
1.29%
PYKS
26
1.24%
F3'H/CYP75B
24
1.14%
CAS
22
1.05%
GS
20
0.95%
CYP71
20
0.95%
IO
19
0.9%
CCR
19
0.9%
TRI/TRII
18
0.86%
HCT
18
0.86%
TAT
18
0.86%
PMT
17
0.81%
RAS
17
0.81%
NCS
16
0.76%
G8O/G8H
16
0.76%
ANS/LDOX
16
0.76%
CNMT
14
0.67%
F3'5'H/CYP75A
14
0.67%
ANR
14
0.67%
T16H
13
0.62%
FNS
13
0.62%
CYP90D1
13
0.62%
8HGO
12
0.57%
SGD
12
0.57%
BR6OX1/CYP85A1
11
0.52%
SLS
10
0.48%
F5H/CYP84A
10
0.48%
BBE
9
0.43%
CPR
9
0.43%
CPD/CYP90A1
9
0.43%
TPS
9
0.43%
7DLH
8
0.38%
GES
8
0.38%
SQS/FDFT1
8
0.38%
MVK
8
0.38%
AACT
8
0.38%
CYP719
7
0.33%
DFR
7
0.33%
MVD
7
0.33%
FPPS
7
0.33%
COR
6
0.29%
MPO
6
0.29%
CHS
6
0.29%
COMT
6
0.29%
DET2
6
0.29%
SQE
6
0.29%
ROT3/CYP90C1
6
0.29%
ISY
5
0.24%
CCoAOMT
5
0.24%
HPPR
5
0.24%
CYP51G1
5
0.24%
DWF1
5
0.24%
GGPPS
5
0.24%
DXS
5
0.24%
HMGR
5
0.24%
TYDC_DDC
4
0.19%
CYP80B1
4
0.19%
SMO1/SMO2
4
0.19%
PMK
4
0.19%
LAMT
3
0.14%
16OMT
3
0.14%
CHI
3
0.14%
CMK/IspE
3
0.14%
MCT/IspD
3
0.14%
IDI
3
0.14%
TDC
2
0.1%
ADC
2
0.1%
FK
2
0.1%
CPI1
2
0.1%
DWF7
2
0.1%
HYD1
2
0.1%
MDS/IspF
2
0.1%
HDS/IspG
2
0.1%
HDR/IspH
2
0.1%
HMGS
2
0.1%
ODC
1
0.05%
FLS
1
0.05%
DWF5
1
0.05%
DXR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 255 | 19 | BAHD (118) | View species results |
| Phenylpropanoid pathway | 204 | 10 | POD (104) | View species results |
| Alkaloid pathway | 155 | 19 | NMT (39) | View species results |
| Flavonoid pathway | 82 | 7 | UFGT (45) | View species results |
| Rosmarinic acid pathway | 59 | 6 | 4CL (18) | View species results |
| Steroid pathway | 59 | 12 | CAS (18) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 666 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 191 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| CargCucurbita_argyrosperma_scaffold_0500117510.1 | Alkaloid | TRI/TRII | low | borderline |
| CargCucurbita_argyrosperma_scaffold_0540123820.1 | Alkaloid | TRI/TRII | low | borderline |
| CargCucurbita_argyrosperma_scaffold_0560126760.1 | Alkaloid | TRI/TRII | medium | pass |
| CargCucurbita_argyrosperma_scaffold_0690145750.1 | Alkaloid | TRI/TRII | low | borderline |
| CargCucurbita_argyrosperma_scaffold_0740151470.1 | Alkaloid | TRI/TRII | medium | pass |
| CargCucurbita_argyrosperma_scaffold_0810157330.1 | Alkaloid | TRI/TRII | medium | pass |
| CargCucurbita_argyrosperma_scaffold_0870163930.1 | Alkaloid | TRI/TRII | low | borderline |
| CargCucurbita_argyrosperma_scaffold_1740224450.1 | Alkaloid | TRI/TRII | low | borderline |
| CargCucurbita_argyrosperma_scaffold_1760225850.1 | Alkaloid | TRI/TRII | low | borderline |
| CargCucurbita_argyrosperma_scaffold_3140262760.1 | Alkaloid | TRI/TRII | low | borderline |
| CargCucurbita_argyrosperma_scaffold_0040015540.1 | Alkaloid | TYDC_DDC | low | borderline |
| CargCucurbita_argyrosperma_scaffold_1050181220.1 | Alkaloid | TYDC_DDC | medium | borderline |
| CargCucurbita_argyrosperma_scaffold_1590216500.1 | Alkaloid | TYDC_DDC | medium | borderline |
| CargCucurbita_argyrosperma_scaffold_2560251890.1 | Alkaloid | TYDC_DDC | medium | borderline |