PlantSME Plant secondary metabolism enzyme database

Daucus carota (daucus_carota)

Imported from atlas release summary for Daucus carota.

2057
Candidate Protein Records
1540
Pathway-Level Records
4270
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 32.27% Alkaloid pathway 22.27% Phenylpropanoid pathway 18.18% Flavonoid pathway 12.6% Rosmarinic acid pathway 9.68% Steroid pathway 5.0%
Family Distribution
BAHD 6.65% C4H 6.42% C3'H/CYP98A 5.74% UGT 4.17% CYP76 4.05% 4CL 3.86% IFS 3.33% POD 3.26%
Other Families 62.53%
More Families (95)
7DLGT 138 3.23% T3O 133 3.11% UFGT 129 3.02% F3H 121 2.83% F3'H/CYP75B 98 2.3% DWF4/CYP90B1 92 2.15% STR 89 2.08% NMT 85 1.99% CODM/T6ODM 78 1.83% BR6OX2/CYP85A2 77 1.8% BBE 68 1.59% CAD 62 1.45% H6H 60 1.41% SMT1/SMT2/SMT3 57 1.33% CYP71 56 1.31% HCT 53 1.24% TRI/TRII 52 1.22% TAT 50 1.17% PMT 48 1.12% PYKS 47 1.1% G8O/G8H 45 1.05% GS 43 1.01% IFR 41 0.96% CAS 41 0.96% LAC 39 0.91% SLS 38 0.89% TPS 38 0.89% GES 37 0.87% NCS 36 0.84% T16H 34 0.8% FNS 34 0.8% ANR 31 0.73% F5H/CYP84A 31 0.73% CSE 31 0.73% IO 29 0.68% ANS/LDOX 28 0.66% RAS 28 0.66% CYP51G1 27 0.63% CYP90D1 24 0.56% 7DLH 22 0.52% F3'5'H/CYP75A 22 0.52% BR6OX1/CYP85A1 21 0.49% COMT 19 0.44% CCR 19 0.44% COR 18 0.42% SGD 18 0.42% CHS 17 0.4% 8HGO 13 0.3% LAMT 11 0.26% CCoAOMT 11 0.26% ROT3/CYP90C1 11 0.26% CPD/CYP90A1 11 0.26% GGPPS 11 0.26% 16OMT 10 0.23% CYP719 10 0.23% DFR 10 0.23% CPR 10 0.23% PAL 9 0.21% TYDC_DDC 8 0.19% CYP80B1 8 0.19% XMT_MXMT_DXMT 8 0.19% SQS/FDFT1 8 0.19% FPPS 8 0.19% MPO 7 0.16% HPPR 7 0.16% SQE 7 0.16% SMO1/SMO2 7 0.16% AACT 7 0.16% CNMT 5 0.12% DET2 5 0.12% PMK 5 0.12% ISY 4 0.09% TDC 4 0.09% MVK 4 0.09% CMK/IspE 4 0.09% MVD 4 0.09% DXS 4 0.09% FLS 3 0.07% CHI 3 0.07% DWF1 3 0.07% CPI1 3 0.07% MCT/IspD 3 0.07% HMGR 3 0.07% HDR/IspH 3 0.07% DWF7 2 0.05% HDS/IspG 2 0.05% DXR 2 0.05% 6OMT_4OMT_SOMT 1 0.02% DWF5 1 0.02% FK 1 0.02% HYD1 1 0.02% GPPS 1 0.02% MDS/IspF 1 0.02% HMGS 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 497 19 BAHD (204) View species results
Alkaloid pathway 343 20 NMT (51) View species results
Phenylpropanoid pathway 280 12 POD (127) View species results
Flavonoid pathway 194 12 UFGT (116) View species results
Rosmarinic acid pathway 149 7 C4H (53) View species results
Steroid pathway 77 11 SMT1/SMT2/SMT3 (28) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 365 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
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Protein/Isoform Record Pathway Family Confidence Status
Dcar09G0019050.1 Rosmarinic Acid C4H low borderline
Dcar09G0019060.1 Rosmarinic Acid C4H low borderline
DcarDCARv2_B100000450.1 Rosmarinic Acid C4H low borderline
DcarDCARv2_B100000470.1 Rosmarinic Acid C4H low borderline
DcarDCARv2_B270002580.1 Rosmarinic Acid C4H low borderline
DcarDCARv2_S551.10005150.1 Rosmarinic Acid C4H low borderline
DcarDCARv2_S551.10005170.1 Rosmarinic Acid C4H low borderline