PlantSME Plant secondary metabolism enzyme database

Davidia involucrata (davidia_involucrata)

Imported from atlas release summary for Davidia involucrata.

2692
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.42% Alkaloid pathway 23.74% Phenylpropanoid pathway 20.84% Steroid pathway 9.18% Flavonoid pathway 8.77% Rosmarinic acid pathway 8.06%
Family Distribution
BAHD 6.89% C4H 5.31% C3'H/CYP98A 5.06% 4CL 4.61% F3H 3.85% POD 3.74% IFS 3.39% UGT 3.12%
Other Families 64.03%
More Families (96)
NMT 212 3.1% CYP76 203 2.97% T3O 187 2.74% DWF4/CYP90B1 156 2.28% 7DLGT 153 2.24% SMT1/SMT2/SMT3 146 2.14% STR 139 2.03% CODM/T6ODM 126 1.84% UFGT 125 1.83% CAS 123 1.8% SGD 119 1.74% IFR 115 1.68% H6H 113 1.65% CAD 111 1.62% LAC 109 1.59% F3'H/CYP75B 106 1.55% TRI/TRII 89 1.3% CYP71 89 1.3% BR6OX2/CYP85A2 80 1.17% CYP90D1 66 0.97% GES 65 0.95% NCS 63 0.92% TPS 63 0.92% GS 62 0.91% COMT 61 0.89% CSE 60 0.88% T16H 57 0.83% HCT 57 0.83% 7DLH 56 0.82% FNS 56 0.82% RAS 55 0.8% SLS 52 0.76% IO 50 0.73% PMT 48 0.7% PYKS 44 0.64% TAT 44 0.64% LAMT 41 0.6% 8HGO 40 0.59% COR 39 0.57% F3'5'H/CYP75A 39 0.57% CPD/CYP90A1 37 0.54% CCR 35 0.51% ANR 33 0.48% BR6OX1/CYP85A1 32 0.47% PAL 30 0.44% AACT 29 0.42% DFR 26 0.38% ROT3/CYP90C1 26 0.38% CYP51G1 25 0.37% 16OMT 24 0.35% G8O/G8H 24 0.35% MPO 22 0.32% ANS/LDOX 22 0.32% MCT/IspD 21 0.31% SQE 20 0.29% DXS 19 0.28% BBE 17 0.25% CPR 17 0.25% SMO1/SMO2 17 0.25% FPPS 17 0.25% TYDC_DDC 16 0.23% HPPR 16 0.23% F5H/CYP84A 14 0.2% GGPPS 14 0.2% CNMT 13 0.19% CHS 13 0.19% SQS/FDFT1 13 0.19% HMGR 13 0.19% CYP719 12 0.18% ISY 11 0.16% CCoAOMT 10 0.15% PMK 10 0.15% MVK 9 0.13% MVD 9 0.13% TDC 8 0.12% CYP80B1 7 0.1% CMK/IspE 7 0.1% ODC 6 0.09% FK 5 0.07% HDR/IspH 5 0.07% IDI 5 0.07% HDS/IspG 5 0.07% 6OMT_4OMT_SOMT 4 0.06% XMT_MXMT_DXMT 4 0.06% CHI 4 0.06% DWF1 4 0.06% CPI1 4 0.06% DWF7 4 0.06% HMGS 4 0.06% DXR 4 0.06% ADC 3 0.04% DET2 3 0.04% CYP80F1 2 0.03% DWF5 2 0.03% FLS 1 0.01% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 792 20 BAHD (377) View species results
Alkaloid pathway 639 25 SGD (117) View species results
Phenylpropanoid pathway 561 11 POD (227) View species results
Steroid pathway 247 12 CAS (100) View species results
Flavonoid pathway 236 14 UFGT (89) View species results
Rosmarinic acid pathway 217 7 C4H (76) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2261 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 583 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Dinv19G0003000.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv19G0003000.3 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv20G0000770.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv20G0000780.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv20G0000800.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv20G0000840.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv20G0003290.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv20G0003300.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Dinv20G0006590.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Dinv20G0006610.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Dinv20G0006640.1 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Dinv20G0006650.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Dinv20G0027390.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA