PlantSME Plant secondary metabolism enzyme database

Diospyros kaki (diospyros_kaki)

Imported from atlas release summary for Diospyros kaki.

6083
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.18% Phenylpropanoid pathway 23.57% Alkaloid pathway 22.59% Flavonoid pathway 12.54% Rosmarinic acid pathway 7.56% Steroid pathway 5.56%
Family Distribution
BAHD 6.07% C4H 5.75% C3'H/CYP98A 5.54% POD 4.18% UGT 3.92% IFS 3.52% 7DLGT 3.5% 4CL 3.5%
Other Families 64.02%
More Families (97)
UFGT 523 3.41% CYP76 507 3.3% F3H 458 2.98% T3O 432 2.82% NMT 383 2.5% DWF4/CYP90B1 304 1.98% CODM/T6ODM 297 1.94% STR 294 1.92% F3'H/CYP75B 286 1.86% BR6OX2/CYP85A2 264 1.72% TRI/TRII 262 1.71% COMT 232 1.51% LAC 228 1.49% CAD 220 1.43% SMT1/SMT2/SMT3 214 1.39% CSE 202 1.32% H6H 195 1.27% PYKS 181 1.18% 16OMT 180 1.17% IFR 163 1.06% CYP71 161 1.05% SGD 152 0.99% CAS 147 0.96% HCT 129 0.84% GS 123 0.8% IO 122 0.8% CYP90D1 120 0.78% T16H 114 0.74% TPS 112 0.73% F3'5'H/CYP75A 109 0.71% G8O/G8H 105 0.68% PAL 105 0.68% BBE 104 0.68% ANR 103 0.67% RAS 95 0.62% 7DLH 94 0.61% BR6OX1/CYP85A1 94 0.61% GES 93 0.61% DFR 92 0.6% SLS 91 0.59% TAT 86 0.56% NCS 85 0.55% PMT 80 0.52% F5H/CYP84A 78 0.51% CCR 75 0.49% 8HGO 72 0.47% COR 63 0.41% CPD/CYP90A1 63 0.41% FNS 55 0.36% ANS/LDOX 54 0.35% ROT3/CYP90C1 52 0.34% CHS 51 0.33% AACT 47 0.31% MPO 46 0.3% CPR 45 0.29% GGPPS 44 0.29% CYP51G1 42 0.27% FPPS 40 0.26% TYDC_DDC 39 0.25% CYP719 39 0.25% CYP80B1 35 0.23% HPPR 33 0.22% SQE 33 0.22% CCoAOMT 31 0.2% 6OMT_4OMT_SOMT 28 0.18% SQS/FDFT1 28 0.18% DXS 28 0.18% CNMT 27 0.18% MVK 25 0.16% MVD 21 0.14% HMGR 19 0.12% IDI 19 0.12% CHI 18 0.12% DXR 18 0.12% LAMT 17 0.11% DWF1 17 0.11% DET2 16 0.1% SMO1/SMO2 16 0.1% ADC 15 0.1% MCT/IspD 14 0.09% HMGS 13 0.08% TDC 11 0.07% CPI1 11 0.07% HDR/IspH 10 0.07% ISY 9 0.06% PMK 9 0.06% XMT_MXMT_DXMT 8 0.05% FK 8 0.05% CMK/IspE 8 0.05% MDS/IspF 7 0.05% DWF5 6 0.04% CYP80F1 5 0.03% HYD1 5 0.03% HDS/IspG 5 0.03% FLS 3 0.02% ODC 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1714 19 BAHD (687) View species results
Phenylpropanoid pathway 1434 13 POD (581) View species results
Alkaloid pathway 1374 25 7DLGT (227) View species results
Flavonoid pathway 763 13 UFGT (465) View species results
Rosmarinic acid pathway 460 7 C4H (177) View species results
Steroid pathway 338 13 CAS (124) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5390 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1155 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'5'H/CYP75A
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Gene Pathway Family Confidence Status Best Target
diospyros_kaki_evm.model.contig7846.553 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
diospyros_kaki_evm.model.contig8029.355 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
diospyros_kaki_evm.model.contig807.19 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
diospyros_kaki_evm.model.contig8387.355 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
diospyros_kaki_evm.model.contig8474.10 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
diospyros_kaki_evm.model.contig8612.27 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
diospyros_kaki_evm.model.contig8852.469 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
diospyros_kaki_evm.model.contig9693.62 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00002__sp_O04790_C75A7_EUSRU
diospyros_kaki_evm.model.contig9698.68 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY