PlantSME Plant secondary metabolism enzyme database

Diospyros lotus (diospyros_lotus)

Imported from atlas release summary for Diospyros lotus.

2456
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.29% Alkaloid pathway 24.51% Phenylpropanoid pathway 20.11% Flavonoid pathway 12.5% Rosmarinic acid pathway 7.45% Steroid pathway 5.13%
Family Distribution
BAHD 5.85% C4H 5.52% C3'H/CYP98A 5.19% UGT 4.33% CYP76 3.86% 7DLGT 3.81% UFGT 3.76% F3H 3.73%
Other Families 63.94%
More Families (97)
POD 204 3.55% IFS 189 3.29% T3O 177 3.08% CODM/T6ODM 140 2.44% 4CL 138 2.4% NMT 128 2.23% TPS 114 1.98% CAD 109 1.9% GES 106 1.85% F3'H/CYP75B 103 1.79% DWF4/CYP90B1 103 1.79% TRI/TRII 97 1.69% COMT 90 1.57% BR6OX2/CYP85A2 88 1.53% H6H 87 1.51% STR 86 1.5% 16OMT 78 1.36% CAS 72 1.25% SMT1/SMT2/SMT3 66 1.15% PYKS 65 1.13% CSE 65 1.13% LAC 62 1.08% G8O/G8H 53 0.92% SGD 52 0.91% BBE 50 0.87% NCS 49 0.85% IFR 46 0.8% DFR 43 0.75% CYP90D1 43 0.75% IO 39 0.68% F3'5'H/CYP75A 39 0.68% CYP71 39 0.68% ANR 38 0.66% HCT 38 0.66% T16H 37 0.64% GS 37 0.64% FNS 37 0.64% TAT 35 0.61% CHS 34 0.59% F5H/CYP84A 33 0.57% PMT 32 0.56% CCR 31 0.54% CPD/CYP90A1 29 0.5% BR6OX1/CYP85A1 28 0.49% SLS 26 0.45% RAS 23 0.4% ANS/LDOX 22 0.38% CPR 22 0.38% PAL 21 0.37% CYP51G1 21 0.37% 7DLH 20 0.35% COR 20 0.35% 8HGO 19 0.33% ROT3/CYP90C1 18 0.31% CCoAOMT 15 0.26% CYP80B1 13 0.23% LAMT 11 0.19% MPO 11 0.19% FPPS 11 0.19% HPPR 10 0.17% CNMT 9 0.16% CYP719 9 0.16% AACT 9 0.16% TYDC_DDC 8 0.14% SQE 8 0.14% DXS 8 0.14% SQS/FDFT1 7 0.12% GGPPS 7 0.12% MVK 7 0.12% 6OMT_4OMT_SOMT 6 0.1% ISY 6 0.1% FLS 6 0.1% XMT_MXMT_DXMT 5 0.09% CHI 5 0.09% DET2 5 0.09% ADC 4 0.07% TDC 4 0.07% IDI 4 0.07% HMGR 4 0.07% CYP80F1 3 0.05% FK 3 0.05% DWF1 3 0.05% SMO1/SMO2 3 0.05% MVD 3 0.05% MCT/IspD 3 0.05% HMGS 3 0.05% PMK 3 0.05% HYD1 2 0.03% DWF5 2 0.03% CMK/IspE 2 0.03% DXR 2 0.03% MDS/IspF 2 0.03% GPPS 2 0.03% DWF7 1 0.02% CPI1 1 0.02% HDR/IspH 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 744 21 BAHD (264) View species results
Alkaloid pathway 602 23 GES (97) View species results
Phenylpropanoid pathway 494 11 POD (187) View species results
Flavonoid pathway 307 13 UFGT (195) View species results
Rosmarinic acid pathway 183 7 C4H (90) View species results
Steroid pathway 126 13 CAS (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1947 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 397 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
DlotDlo_pri0442F.10425660.1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
DlotDlo_pri0442F.10425670.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
DlotDlo_pri0445F.10426220.1 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
DlotDlo_pri0471F.10432800.1 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
DlotDlo_pri0471F.10432810.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
DlotDlo_pri0563F.10447260.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
DlotDlo_pri0563F.10447270.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
DlotDlo_pri0563F.10447290.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
DlotDlo_pri1217F.10494950.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
DlotDlo_pri1257F.10496180.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
DlotDlo_pri1257F.10496190.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
DlotDlo_pri1463F.10501220.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH