PlantSME Plant secondary metabolism enzyme database

Gossypium longicalyx (gossypium_longicalyx)

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Imported from atlas release summary for Gossypium longicalyx.

1982
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.25% Alkaloid pathway 22.65% Phenylpropanoid pathway 22.35% Flavonoid pathway 12.06% Rosmarinic acid pathway 8.12% Steroid pathway 6.56%
Family Distribution
C4H 6.89% C3'H/CYP98A 6.37% BAHD 5.22% IFS 4.1% CYP76 3.96% T3O 3.86% F3H 3.47% POD 3.45%
Other Families 62.68%
More Families (98)
7DLGT 169 3.37% UGT 168 3.35% UFGT 167 3.33% 4CL 162 3.23% DWF4/CYP90B1 102 2.03% F3'H/CYP75B 98 1.95% NMT 97 1.93% BR6OX2/CYP85A2 96 1.91% STR 89 1.77% CODM/T6ODM 86 1.71% CAD 83 1.65% H6H 81 1.61% CAS 75 1.49% LAC 73 1.45% CYP90D1 68 1.35% TRI/TRII 64 1.27% CYP71 64 1.27% SMT1/SMT2/SMT3 63 1.25% TPS 63 1.25% GES 62 1.23% CSE 54 1.08% 7DLH 52 1.04% HCT 49 0.98% BBE 48 0.96% COMT 46 0.92% GS 45 0.9% RAS 45 0.9% PYKS 37 0.74% T16H 36 0.72% IFR 34 0.68% NCS 31 0.62% G8O/G8H 31 0.62% 16OMT 31 0.62% ANR 31 0.62% IO 30 0.6% CPD/CYP90A1 29 0.58% PAL 27 0.54% SGD 26 0.52% PMT 25 0.5% F3'5'H/CYP75A 25 0.5% CCR 24 0.48% F5H/CYP84A 24 0.48% FNS 23 0.46% COR 22 0.44% TAT 22 0.44% CYP51G1 22 0.44% ROT3/CYP90C1 22 0.44% SLS 20 0.4% BR6OX1/CYP85A1 19 0.38% 8HGO 18 0.36% GGPPS 16 0.32% LAMT 14 0.28% CNMT 13 0.26% ANS/LDOX 13 0.26% SQE 13 0.26% FPPS 12 0.24% TYDC_DDC 10 0.2% DFR 10 0.2% CCoAOMT 10 0.2% MPO 9 0.18% CHS 9 0.18% HPPR 9 0.18% HMGR 9 0.18% SQS/FDFT1 8 0.16% SMO1/SMO2 8 0.16% ISY 7 0.14% CPR 7 0.14% HMGS 7 0.14% AACT 6 0.12% DXS 6 0.12% CYP80B1 5 0.1% CYP719 5 0.1% DET2 5 0.1% MVK 5 0.1% MVD 5 0.1% ADC 4 0.08% FLS 4 0.08% CHI 4 0.08% MCT/IspD 4 0.08% TDC 3 0.06% ODC 3 0.06% CYP80F1 3 0.06% HDR/IspH 3 0.06% DXR 3 0.06% DWF1 2 0.04% DWF5 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% XMT_MXMT_DXMT 1 0.02% FK 1 0.02% DWF7 1 0.02% CPI1 1 0.02% HYD1 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% HDS/IspG 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 560 21 BAHD (202) View species results
Alkaloid pathway 449 21 7DLGT (79) View species results
Phenylpropanoid pathway 443 11 POD (168) View species results
Flavonoid pathway 239 10 UFGT (157) View species results
Rosmarinic acid pathway 161 7 C4H (62) View species results
Steroid pathway 130 12 CAS (65) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2016 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 356 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
gossypium_longicalyx_Glon_09G046880.1 Rosmarinic Acid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
gossypium_longicalyx_Glon_10G010060.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
gossypium_longicalyx_Glon_10G017470.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
gossypium_longicalyx_Glon_10G018380.1 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
gossypium_longicalyx_Glon_10G026910.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
gossypium_longicalyx_Glon_10G028860.1 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
gossypium_longicalyx_Glon_11G002560.1 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
gossypium_longicalyx_Glon_11G004110.1 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
gossypium_longicalyx_Glon_11G019030.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
gossypium_longicalyx_Glon_11G039060.1 Rosmarinic Acid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
gossypium_longicalyx_Glon_12G013880.1 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
gossypium_longicalyx_Glon_13G000410.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH