Gossypium longicalyx (gossypium_longicalyx)
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Imported from atlas release summary for Gossypium longicalyx.
1982
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1982
Candidate Genes
C4H
6.89%
C3'H/CYP98A
6.37%
BAHD
5.22%
IFS
4.1%
CYP76
3.96%
T3O
3.86%
F3H
3.47%
POD
3.45%
Other Families
62.68%
More Families (98)
7DLGT
169
3.37%
UGT
168
3.35%
UFGT
167
3.33%
4CL
162
3.23%
DWF4/CYP90B1
102
2.03%
F3'H/CYP75B
98
1.95%
NMT
97
1.93%
BR6OX2/CYP85A2
96
1.91%
STR
89
1.77%
CODM/T6ODM
86
1.71%
CAD
83
1.65%
H6H
81
1.61%
CAS
75
1.49%
LAC
73
1.45%
CYP90D1
68
1.35%
TRI/TRII
64
1.27%
CYP71
64
1.27%
SMT1/SMT2/SMT3
63
1.25%
TPS
63
1.25%
GES
62
1.23%
CSE
54
1.08%
7DLH
52
1.04%
HCT
49
0.98%
BBE
48
0.96%
COMT
46
0.92%
GS
45
0.9%
RAS
45
0.9%
PYKS
37
0.74%
T16H
36
0.72%
IFR
34
0.68%
NCS
31
0.62%
G8O/G8H
31
0.62%
16OMT
31
0.62%
ANR
31
0.62%
IO
30
0.6%
CPD/CYP90A1
29
0.58%
PAL
27
0.54%
SGD
26
0.52%
PMT
25
0.5%
F3'5'H/CYP75A
25
0.5%
CCR
24
0.48%
F5H/CYP84A
24
0.48%
FNS
23
0.46%
COR
22
0.44%
TAT
22
0.44%
CYP51G1
22
0.44%
ROT3/CYP90C1
22
0.44%
SLS
20
0.4%
BR6OX1/CYP85A1
19
0.38%
8HGO
18
0.36%
GGPPS
16
0.32%
LAMT
14
0.28%
CNMT
13
0.26%
ANS/LDOX
13
0.26%
SQE
13
0.26%
FPPS
12
0.24%
TYDC_DDC
10
0.2%
DFR
10
0.2%
CCoAOMT
10
0.2%
MPO
9
0.18%
CHS
9
0.18%
HPPR
9
0.18%
HMGR
9
0.18%
SQS/FDFT1
8
0.16%
SMO1/SMO2
8
0.16%
ISY
7
0.14%
CPR
7
0.14%
HMGS
7
0.14%
AACT
6
0.12%
DXS
6
0.12%
CYP80B1
5
0.1%
CYP719
5
0.1%
DET2
5
0.1%
MVK
5
0.1%
MVD
5
0.1%
ADC
4
0.08%
FLS
4
0.08%
CHI
4
0.08%
MCT/IspD
4
0.08%
TDC
3
0.06%
ODC
3
0.06%
CYP80F1
3
0.06%
HDR/IspH
3
0.06%
DXR
3
0.06%
DWF1
2
0.04%
DWF5
2
0.04%
MDS/IspF
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
HYD1
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
HDS/IspG
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 560 | 21 | BAHD (202) | View species results |
| Alkaloid pathway | 449 | 21 | 7DLGT (79) | View species results |
| Phenylpropanoid pathway | 443 | 11 | POD (168) | View species results |
| Flavonoid pathway | 239 | 10 | UFGT (157) | View species results |
| Rosmarinic acid pathway | 161 | 7 | C4H (62) | View species results |
| Steroid pathway | 130 | 12 | CAS (65) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2016 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 356 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| gossypium_longicalyx_Glon_09G023070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_09G029720.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_09G030230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_09G030270.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_09G037040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_09G038000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_09G039670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_09G040090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_09G040370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_09G041060.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_09G043850.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_09G055570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_10G005380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_10G009250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_10G026380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_10G027110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_10G027130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G011300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G011310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G023820.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G024710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G024750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G026550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G026560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_11G038930.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_11G039890.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_11G039900.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_11G039910.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| gossypium_longicalyx_Glon_11G043420.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_12G000810.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_12G007840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_12G011210.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_12G012730.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_12G018160.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| gossypium_longicalyx_Glon_13G000550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_13G004980.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| gossypium_longicalyx_Glon_13G006410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_13G018000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| gossypium_longicalyx_Glon_13G028190.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |