PlantSME Plant secondary metabolism enzyme database

Gossypium mustelinum (gossypium_mustelinum)

Imported from atlas release summary for Gossypium mustelinum.

4710
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.15% Alkaloid pathway 23.01% Phenylpropanoid pathway 21.89% Flavonoid pathway 10.74% Rosmarinic acid pathway 7.83% Steroid pathway 7.37%
Family Distribution
C4H 6.97% BAHD 6.38% C3'H/CYP98A 5.83% IFS 3.96% CYP76 3.84% POD 3.66% T3O 3.54% F3H 3.51%
Other Families 62.33%
More Families (98)
4CL 411 3.51% UGT 341 2.91% UFGT 338 2.89% 7DLGT 330 2.82% NMT 320 2.73% DWF4/CYP90B1 231 1.97% BR6OX2/CYP85A2 220 1.88% CODM/T6ODM 212 1.81% STR 206 1.76% CAS 202 1.73% F3'H/CYP75B 197 1.68% H6H 183 1.56% CAD 171 1.46% CYP71 166 1.42% CYP90D1 151 1.29% LAC 149 1.27% TRI/TRII 148 1.26% SMT1/SMT2/SMT3 147 1.26% TPS 135 1.15% 7DLH 133 1.14% GES 132 1.13% HCT 121 1.03% CSE 121 1.03% RAS 108 0.92% GS 105 0.9% COMT 102 0.87% IFR 92 0.79% BBE 83 0.71% IO 82 0.7% PYKS 76 0.65% NCS 74 0.63% T16H 72 0.62% 16OMT 72 0.62% G8O/G8H 70 0.6% PMT 68 0.58% SGD 67 0.57% ANR 66 0.56% COR 65 0.56% FNS 64 0.55% CCR 59 0.5% CPD/CYP90A1 59 0.5% BR6OX1/CYP85A1 56 0.48% TAT 53 0.45% F5H/CYP84A 52 0.44% ROT3/CYP90C1 52 0.44% SLS 50 0.43% F3'5'H/CYP75A 46 0.39% CYP51G1 46 0.39% CNMT 43 0.37% 8HGO 42 0.36% PAL 42 0.36% SQE 34 0.29% GGPPS 33 0.28% DFR 30 0.26% ANS/LDOX 28 0.24% LAMT 27 0.23% MPO 27 0.23% MVD 27 0.23% CCoAOMT 26 0.22% CPR 26 0.22% FPPS 26 0.22% ISY 21 0.18% SQS/FDFT1 21 0.18% CHS 20 0.17% SMO1/SMO2 20 0.17% MCT/IspD 19 0.16% ADC 18 0.15% HMGR 17 0.15% AACT 17 0.15% HMGS 16 0.14% CYP719 15 0.13% DXS 15 0.13% TYDC_DDC 14 0.12% HPPR 14 0.12% MVK 14 0.12% DXR 14 0.12% CYP80B1 11 0.09% CHI 11 0.09% DET2 11 0.09% FLS 9 0.08% DWF5 9 0.08% TDC 8 0.07% CYP80F1 7 0.06% HYD1 7 0.06% DWF7 7 0.06% MDS/IspF 6 0.05% HDR/IspH 6 0.05% HDS/IspG 5 0.04% ODC 4 0.03% 6OMT_4OMT_SOMT 4 0.03% DWF1 4 0.03% FK 3 0.03% CPI1 2 0.02% CMK/IspE 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02% XMT_MXMT_DXMT 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1373 21 BAHD (595) View species results
Alkaloid pathway 1084 25 NMT (185) View species results
Phenylpropanoid pathway 1031 11 POD (412) View species results
Flavonoid pathway 506 13 UFGT (309) View species results
Rosmarinic acid pathway 369 7 C4H (136) View species results
Steroid pathway 347 14 CAS (179) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4539 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 975 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
GmusD08G0019270.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
GmusD08G0019270.2 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
GmusD08G0024440.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
GmusD08G0024440.2 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
GmusD09G0003240.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
GmusD09G0003240.2 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
GmusD10G0014210.1 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
GmusD10G0014210.2 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
GmusD12G0005460.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH