PlantSME Plant secondary metabolism enzyme database

Ilex latifolia (ilex_latifolia)

Imported from atlas release summary for Ilex latifolia.

2441
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.58% Alkaloid pathway 23.6% Phenylpropanoid pathway 17.04% Flavonoid pathway 15.4% Rosmarinic acid pathway 7.87% Steroid pathway 6.51%
Family Distribution
C4H 6.34% C3'H/CYP98A 6.22% UGT 5.59% 7DLGT 5.21% UFGT 5.04% BAHD 4.19% IFS 3.83% CYP76 3.56%
Other Families 60.01%
More Families (95)
T3O 199 3.4% F3H 196 3.35% POD 160 2.74% 4CL 156 2.67% DWF4/CYP90B1 153 2.62% CAD 133 2.27% F3'H/CYP75B 129 2.21% CODM/T6ODM 122 2.09% TPS 97 1.66% CAS 96 1.64% GES 92 1.57% H6H 88 1.5% BR6OX2/CYP85A2 83 1.42% NMT 76 1.3% SMT1/SMT2/SMT3 72 1.23% BBE 71 1.21% STR 70 1.2% CYP71 70 1.2% TRI/TRII 62 1.06% CSE 62 1.06% GS 61 1.04% CYP90D1 59 1.01% SGD 55 0.94% IO 54 0.92% IFR 50 0.85% LAC 45 0.77% 7DLH 40 0.68% G8O/G8H 39 0.67% PYKS 38 0.65% HCT 38 0.65% SLS 36 0.62% COMT 36 0.62% LAMT 35 0.6% ANR 35 0.6% T16H 34 0.58% CPD/CYP90A1 33 0.56% CCR 29 0.5% 16OMT 28 0.48% RAS 28 0.48% PAL 27 0.46% PMT 26 0.44% F3'5'H/CYP75A 26 0.44% NCS 25 0.43% TAT 25 0.43% ROT3/CYP90C1 25 0.43% FNS 24 0.41% BR6OX1/CYP85A1 24 0.41% 8HGO 21 0.36% ANS/LDOX 21 0.36% CYP51G1 20 0.34% DFR 19 0.32% F5H/CYP84A 17 0.29% ISY 16 0.27% COR 16 0.27% SQE 13 0.22% CYP719 12 0.21% GGPPS 11 0.19% FPPS 11 0.19% MPO 10 0.17% CNMT 10 0.17% AACT 10 0.17% CHS 9 0.15% CCoAOMT 9 0.15% CPR 9 0.15% TYDC_DDC 8 0.14% HPPR 8 0.14% SMO1/SMO2 8 0.14% DXR 8 0.14% CYP80B1 6 0.1% MVK 6 0.1% MVD 6 0.1% TDC 5 0.09% SQS/FDFT1 5 0.09% PMK 5 0.09% DXS 5 0.09% CHI 4 0.07% DET2 4 0.07% HMGR 4 0.07% XMT_MXMT_DXMT 3 0.05% DWF5 3 0.05% HYD1 3 0.05% CYP80F1 2 0.03% FK 2 0.03% DWF7 2 0.03% DWF1 2 0.03% HMGS 2 0.03% HDR/IspH 2 0.03% MCT/IspD 2 0.03% HDS/IspG 2 0.03% MDS/IspF 2 0.03% ODC 1 0.02% ADC 1 0.02% CPI1 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 722 19 UGT (304) View species results
Alkaloid pathway 576 21 7DLGT (171) View species results
Phenylpropanoid pathway 416 11 POD (147) View species results
Flavonoid pathway 376 12 UFGT (282) View species results
Rosmarinic acid pathway 192 7 C4H (100) View species results
Steroid pathway 159 12 CAS (79) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2228 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 311 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
ilex_latifolia_GWHPBIST023813 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST023814 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST023815 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST026848 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST028713 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST028813 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST029298 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
ilex_latifolia_GWHPBIST029300 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
ilex_latifolia_GWHPBIST029392 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST029393 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST029484 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST029774 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST030441 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST031570 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST031575 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST031579 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST032818 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST033176 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST033917 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
ilex_latifolia_GWHPBIST035057 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR