PlantSME Plant secondary metabolism enzyme database

Ipomoea batatas (ipomoea_batatas)

Imported from atlas release summary for Ipomoea batatas.

3736
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.25% Alkaloid pathway 21.63% Phenylpropanoid pathway 20.61% Flavonoid pathway 12.23% Rosmarinic acid pathway 8.57% Steroid pathway 4.71%
Family Distribution
C4H 7.38% BAHD 5.97% C3'H/CYP98A 5.51% UGT 5.38% CYP76 4.4% 7DLGT 4.11% IFS 3.91% UFGT 3.7%
Other Families 59.63%
More Families (98)
POD 314 3.63% 4CL 285 3.29% T3O 235 2.72% BR6OX2/CYP85A2 194 2.24% DWF4/CYP90B1 188 2.17% F3'H/CYP75B 180 2.08% NMT 149 1.72% F3H 149 1.72% CAD 139 1.61% TPS 139 1.61% CODM/T6ODM 120 1.39% LAC 119 1.38% T16H 114 1.32% STR 111 1.28% GES 110 1.27% CAS 107 1.24% TRI/TRII 105 1.21% CSE 99 1.14% IO 97 1.12% CYP71 95 1.1% G8O/G8H 94 1.09% SMT1/SMT2/SMT3 92 1.06% H6H 86 0.99% BBE 80 0.92% RAS 77 0.89% 7DLH 76 0.88% FNS 74 0.86% GS 72 0.83% HCT 66 0.76% F5H/CYP84A 60 0.69% F3'5'H/CYP75A 58 0.67% CYP90D1 58 0.67% PYKS 56 0.65% PMT 54 0.62% COMT 49 0.57% TAT 49 0.57% PAL 45 0.52% FPPS 45 0.52% CPD/CYP90A1 43 0.5% IFR 42 0.49% 8HGO 41 0.47% ANS/LDOX 41 0.47% SGD 37 0.43% DFR 36 0.42% SLS 33 0.38% NCS 29 0.34% CCR 28 0.32% BR6OX1/CYP85A1 28 0.32% 16OMT 27 0.31% CHS 27 0.31% ROT3/CYP90C1 27 0.31% HMGR 26 0.3% CYP80B1 25 0.29% LAMT 23 0.27% ANR 23 0.27% AACT 22 0.25% ISY 21 0.24% CCoAOMT 21 0.24% CYP51G1 21 0.24% COR 19 0.22% DXS 18 0.21% SQS/FDFT1 17 0.2% 6OMT_4OMT_SOMT 15 0.17% GGPPS 15 0.17% SQE 14 0.16% CPR 13 0.15% MPO 12 0.14% FLS 12 0.14% HPPR 12 0.14% MVK 11 0.13% XMT_MXMT_DXMT 10 0.12% CNMT 9 0.1% IDI 9 0.1% ADC 8 0.09% CYP719 7 0.08% TDC 7 0.08% CHI 7 0.08% PMK 7 0.08% HDR/IspH 7 0.08% TYDC_DDC 6 0.07% DET2 6 0.07% MVD 6 0.07% CYP80F1 5 0.06% SMO1/SMO2 5 0.06% DWF1 5 0.06% ODC 4 0.05% CPI1 4 0.05% DWF7 4 0.05% DWF5 4 0.05% MCT/IspD 3 0.03% HDS/IspG 3 0.03% HMGS 3 0.03% CMK/IspE 3 0.03% HYD1 2 0.02% FK 2 0.02% DXR 2 0.02% GPPS 2 0.02% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1205 21 UGT (425) View species results
Alkaloid pathway 808 27 7DLGT (179) View species results
Phenylpropanoid pathway 770 13 POD (283) View species results
Flavonoid pathway 457 15 UFGT (286) View species results
Rosmarinic acid pathway 320 7 C4H (148) View species results
Steroid pathway 176 14 CAS (87) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3473 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 660 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
Reset
Gene Pathway Family Confidence Status Best Target
Itrk_sc0115791.1_g000001.1 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
Itrk_sc0115903.1_g000001.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Itrk_sc0156754.1_g000001.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Itrk_sc0163214.1_g000001.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Itrk_sc0175671.1_g000001.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB