PlantSME Plant secondary metabolism enzyme database

Philonotis turneriana (philonotis_turneriana)

Imported from atlas release summary for Philonotis turneriana.

985
Candidate Protein Records
732
Pathway-Level Records
1839
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 26.91% Terpenoid pathway 21.86% Alkaloid pathway 19.54% Flavonoid pathway 14.21% Rosmarinic acid pathway 11.48% Steroid pathway 6.01%
Family Distribution
C4H 6.09% POD 5.87% C3'H/CYP98A 5.66% BAHD 5.38% 4CL 4.95% NMT 4.4% CYP76 4.24% PAL 3.92%
Other Families 59.49%
More Families (94)
IFS 50 2.72% F3H 48 2.61% F3'H/CYP75B 44 2.39% DWF4/CYP90B1 44 2.39% STR 43 2.34% T3O 40 2.18% IFR 37 2.01% BR6OX2/CYP85A2 37 2.01% GS 36 1.96% PYKS 35 1.9% CODM/T6ODM 33 1.79% UGT 29 1.58% 7DLGT 27 1.47% UFGT 26 1.41% IO 25 1.36% CAD 25 1.36% CHS 24 1.31% SMT1/SMT2/SMT3 20 1.09% F3'5'H/CYP75A 19 1.03% CAS 17 0.92% CYP71 17 0.92% TRI/TRII 16 0.87% G8O/G8H 16 0.87% COMT 16 0.87% H6H 13 0.71% 7DLH 13 0.71% CYP90D1 13 0.71% SLS 12 0.65% NCS 12 0.65% RAS 12 0.65% T16H 11 0.6% CCR 11 0.6% HCT 11 0.6% ANR 10 0.54% SGD 9 0.49% LAMT 9 0.49% 8HGO 9 0.49% CYP80B1 9 0.49% 16OMT 9 0.49% CSE 9 0.49% CPD/CYP90A1 9 0.49% COR 8 0.44% LAC 8 0.44% CNMT 7 0.38% TDC 7 0.38% PMT 7 0.38% FNS 7 0.38% F5H/CYP84A 7 0.38% CPR 7 0.38% SQS/FDFT1 7 0.38% TPS 7 0.38% BBE 5 0.27% DFR 5 0.27% DET2 5 0.27% DWF5 5 0.27% GGPPS 5 0.27% AACT 5 0.27% MVK 5 0.27% GES 4 0.22% MPO 4 0.22% CHI 4 0.22% BR6OX1/CYP85A1 4 0.22% SMO1/SMO2 4 0.22% TYDC_DDC 3 0.16% CYP80F1 3 0.16% ISY 3 0.16% ANS/LDOX 3 0.16% CCoAOMT 3 0.16% TAT 3 0.16% HYD1 3 0.16% ROT3/CYP90C1 3 0.16% FPPS 3 0.16% DXS 3 0.16% CYP719 2 0.11% ADC 2 0.11% FLS 2 0.11% SQE 2 0.11% CYP51G1 2 0.11% FK 2 0.11% IDI 2 0.11% HDS/IspG 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% MVD 2 0.11% HPPR 1 0.05% CPI1 1 0.05% DWF1 1 0.05% DWF7 1 0.05% DXR 1 0.05% MCT/IspD 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05% HMGR 1 0.05% MDS/IspF 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 197 11 POD (102) View species results
Terpenoid pathway 160 19 BAHD (72) View species results
Alkaloid pathway 143 18 NMT (32) View species results
Flavonoid pathway 104 11 PAL (24) View species results
Rosmarinic acid pathway 84 7 C4H (28) View species results
Steroid pathway 44 13 CAS (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 674 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 122 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Pturscaffold_30129590 Alkaloid TRI/TRII low borderline
Pturscaffold_30133400 Alkaloid TRI/TRII medium pass
Pturscaffold_30164630 Alkaloid TRI/TRII low borderline
Pturscaffold_40180170 Alkaloid TRI/TRII medium pass
Pturscaffold_50212280 Alkaloid TRI/TRII low borderline
Pturscaffold_50239890 Alkaloid TRI/TRII low borderline
Pturscaffold_50241110 Alkaloid TRI/TRII medium pass
Pturscaffold_50241160 Alkaloid TRI/TRII low borderline
Pturscaffold_50248240 Alkaloid TRI/TRII medium pass
Pturscaffold_60270810 Alkaloid TRI/TRII medium pass
Pturscaffold_10045560 Alkaloid TYDC_DDC medium borderline
Pturscaffold_10070680 Alkaloid TYDC_DDC low borderline
Pturscaffold_60277720 Alkaloid TYDC_DDC medium borderline