Physalis grisea (physalis_grisea)
/
Imported from atlas release summary for Physalis grisea.
1864
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1864
Candidate Genes
C4H
6.39%
C3'H/CYP98A
6.21%
BAHD
5.6%
UGT
4.5%
7DLGT
4.12%
UFGT
4.12%
IFS
3.85%
T3O
3.83%
Other Families
61.38%
More Families (96)
4CL
165
3.71%
CYP76
152
3.42%
POD
141
3.17%
F3H
125
2.81%
DWF4/CYP90B1
122
2.75%
F3'H/CYP75B
106
2.39%
NMT
87
1.96%
BR6OX2/CYP85A2
76
1.71%
CODM/T6ODM
72
1.62%
TPS
71
1.6%
STR
70
1.58%
CAD
70
1.58%
H6H
69
1.55%
CYP71
67
1.51%
GES
65
1.46%
TRI/TRII
62
1.4%
SMT1/SMT2/SMT3
62
1.4%
TAT
61
1.37%
CAS
50
1.13%
LAC
38
0.86%
T16H
37
0.83%
IFR
36
0.81%
CSE
36
0.81%
SLS
35
0.79%
HCT
33
0.74%
COMT
33
0.74%
CYP90D1
32
0.72%
7DLH
31
0.7%
PYKS
29
0.65%
CPD/CYP90A1
28
0.63%
GS
27
0.61%
16OMT
27
0.61%
SGD
26
0.59%
PMT
25
0.56%
FNS
25
0.56%
RAS
25
0.56%
IO
24
0.54%
CYP51G1
24
0.54%
BBE
22
0.5%
G8O/G8H
22
0.5%
F3'5'H/CYP75A
21
0.47%
PAL
21
0.47%
ANR
19
0.43%
F5H/CYP84A
19
0.43%
BR6OX1/CYP85A1
18
0.41%
LAMT
16
0.36%
CCR
16
0.36%
8HGO
15
0.34%
COR
14
0.32%
ROT3/CYP90C1
14
0.32%
MPO
12
0.27%
NCS
12
0.27%
CCoAOMT
12
0.27%
CNMT
10
0.23%
DFR
10
0.23%
FPPS
10
0.23%
ANS/LDOX
9
0.2%
CYP719
8
0.18%
CHS
8
0.18%
SQS/FDFT1
8
0.18%
MVD
8
0.18%
TYDC_DDC
7
0.16%
CYP80B1
7
0.16%
HPPR
7
0.16%
DET2
7
0.16%
AACT
7
0.16%
GGPPS
7
0.16%
HMGR
7
0.16%
XMT_MXMT_DXMT
6
0.14%
CPR
6
0.14%
SQE
6
0.14%
TDC
5
0.11%
6OMT_4OMT_SOMT
5
0.11%
ODC
5
0.11%
ISY
5
0.11%
CHI
5
0.11%
SMO1/SMO2
5
0.11%
DWF1
4
0.09%
HMGS
4
0.09%
MVK
4
0.09%
CMK/IspE
4
0.09%
ADC
3
0.07%
DWF7
3
0.07%
DWF5
3
0.07%
DXS
3
0.07%
IDI
3
0.07%
PMK
2
0.05%
FLS
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
HDR/IspH
1
0.02%
MCT/IspD
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 554 | 19 | BAHD (192) | View species results |
| Alkaloid pathway | 418 | 25 | 7DLGT (87) | View species results |
| Phenylpropanoid pathway | 337 | 12 | POD (141) | View species results |
| Flavonoid pathway | 252 | 15 | UFGT (171) | View species results |
| Rosmarinic acid pathway | 189 | 7 | C4H (81) | View species results |
| Steroid pathway | 114 | 14 | CAS (44) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1744 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 307 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| physalis_grisea_Phygri07g012352.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| physalis_grisea_Phygri08g003550.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| physalis_grisea_Phygri08g012670.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| physalis_grisea_Phygri08g016230.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| physalis_grisea_Phygri08g022200.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| physalis_grisea_Phygri08g025750.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| physalis_grisea_Phygri08g028580.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| physalis_grisea_Phygri08g037000.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| physalis_grisea_Phygri08g037010.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| physalis_grisea_Phygri08g039450.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| physalis_grisea_Phygri08g042400.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| physalis_grisea_Phygri09g002890.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| physalis_grisea_Phygri09g003930.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| physalis_grisea_Phygri11g001270.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| physalis_grisea_Phygri11g010770.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |