PlantSME Plant secondary metabolism enzyme database

Physalis grisea (physalis_grisea)

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Imported from atlas release summary for Physalis grisea.

1864
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.72% Alkaloid pathway 22.42% Phenylpropanoid pathway 18.08% Flavonoid pathway 13.52% Rosmarinic acid pathway 10.14% Steroid pathway 6.12%
Family Distribution
C4H 6.39% C3'H/CYP98A 6.21% BAHD 5.6% UGT 4.5% 7DLGT 4.12% UFGT 4.12% IFS 3.85% T3O 3.83%
Other Families 61.38%
More Families (96)
4CL 165 3.71% CYP76 152 3.42% POD 141 3.17% F3H 125 2.81% DWF4/CYP90B1 122 2.75% F3'H/CYP75B 106 2.39% NMT 87 1.96% BR6OX2/CYP85A2 76 1.71% CODM/T6ODM 72 1.62% TPS 71 1.6% STR 70 1.58% CAD 70 1.58% H6H 69 1.55% CYP71 67 1.51% GES 65 1.46% TRI/TRII 62 1.4% SMT1/SMT2/SMT3 62 1.4% TAT 61 1.37% CAS 50 1.13% LAC 38 0.86% T16H 37 0.83% IFR 36 0.81% CSE 36 0.81% SLS 35 0.79% HCT 33 0.74% COMT 33 0.74% CYP90D1 32 0.72% 7DLH 31 0.7% PYKS 29 0.65% CPD/CYP90A1 28 0.63% GS 27 0.61% 16OMT 27 0.61% SGD 26 0.59% PMT 25 0.56% FNS 25 0.56% RAS 25 0.56% IO 24 0.54% CYP51G1 24 0.54% BBE 22 0.5% G8O/G8H 22 0.5% F3'5'H/CYP75A 21 0.47% PAL 21 0.47% ANR 19 0.43% F5H/CYP84A 19 0.43% BR6OX1/CYP85A1 18 0.41% LAMT 16 0.36% CCR 16 0.36% 8HGO 15 0.34% COR 14 0.32% ROT3/CYP90C1 14 0.32% MPO 12 0.27% NCS 12 0.27% CCoAOMT 12 0.27% CNMT 10 0.23% DFR 10 0.23% FPPS 10 0.23% ANS/LDOX 9 0.2% CYP719 8 0.18% CHS 8 0.18% SQS/FDFT1 8 0.18% MVD 8 0.18% TYDC_DDC 7 0.16% CYP80B1 7 0.16% HPPR 7 0.16% DET2 7 0.16% AACT 7 0.16% GGPPS 7 0.16% HMGR 7 0.16% XMT_MXMT_DXMT 6 0.14% CPR 6 0.14% SQE 6 0.14% TDC 5 0.11% 6OMT_4OMT_SOMT 5 0.11% ODC 5 0.11% ISY 5 0.11% CHI 5 0.11% SMO1/SMO2 5 0.11% DWF1 4 0.09% HMGS 4 0.09% MVK 4 0.09% CMK/IspE 4 0.09% ADC 3 0.07% DWF7 3 0.07% DWF5 3 0.07% DXS 3 0.07% IDI 3 0.07% PMK 2 0.05% FLS 1 0.02% HYD1 1 0.02% CPI1 1 0.02% FK 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02% MCT/IspD 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 554 19 BAHD (192) View species results
Alkaloid pathway 418 25 7DLGT (87) View species results
Phenylpropanoid pathway 337 12 POD (141) View species results
Flavonoid pathway 252 15 UFGT (171) View species results
Rosmarinic acid pathway 189 7 C4H (81) View species results
Steroid pathway 114 14 CAS (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1744 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 307 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
physalis_grisea_Phygri10g010630.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
physalis_grisea_Phygri10g013390.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
physalis_grisea_Phygri10g013400.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
physalis_grisea_Phygri10g013950.1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
physalis_grisea_Phygri10g013960.1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
physalis_grisea_Phygri10g014630.1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
physalis_grisea_Phygri11g015210.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
physalis_grisea_Phygri11g015260.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
physalis_grisea_Phygri12g006230.1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
physalis_grisea_Phygri12g006840.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
physalis_grisea_Phygri12g006870.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
physalis_grisea_Phygri12g012000.1 Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST