PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

1885
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Ppat05G0007500.2 Alkaloid 16OMT medium borderline
Ppat05G0007500.3 Alkaloid 16OMT medium borderline
Ppat12G0002340.1 Alkaloid 16OMT medium borderline
Ppat12G0002340.2 Alkaloid 16OMT medium borderline
Ppat12G0002340.3 Alkaloid 16OMT medium borderline
Ppat12G0002340.4 Alkaloid 16OMT medium borderline
Ppat12G0002340.5 Alkaloid 16OMT medium borderline
Ppat21G0000470.1 Alkaloid 6OMT_4OMT_SOMT low borderline
Ppat01G0002750.1 Alkaloid 7DLGT medium pass
Ppat01G0002750.2 Alkaloid 7DLGT medium pass
Ppat02G0000630.1 Alkaloid 7DLGT low borderline
Ppat02G0000630.10 Alkaloid 7DLGT low borderline
Ppat02G0000630.2 Alkaloid 7DLGT low borderline
Ppat02G0000630.3 Alkaloid 7DLGT low borderline
Ppat02G0000630.4 Alkaloid 7DLGT low borderline
Ppat02G0000630.5 Alkaloid 7DLGT low borderline
Ppat02G0000630.6 Alkaloid 7DLGT low borderline
Ppat02G0000630.7 Alkaloid 7DLGT low borderline
Ppat02G0000630.8 Alkaloid 7DLGT low borderline
Ppat02G0000630.9 Alkaloid 7DLGT low borderline
Ppat04G0006130.1 Alkaloid 7DLGT low borderline
Ppat05G0008920.1 Alkaloid 7DLGT low borderline
Ppat05G0008920.2 Alkaloid 7DLGT low borderline
Ppat05G0008920.3 Alkaloid 7DLGT low borderline
Ppat06G0004880.1 Alkaloid 7DLGT high pass
Ppat06G0004880.2 Alkaloid 7DLGT medium pass
Ppat06G0004880.3 Alkaloid 7DLGT medium pass
Ppat06G0004880.4 Alkaloid 7DLGT high pass
Ppat06G0004880.5 Alkaloid 7DLGT medium pass
Ppat06G0004880.6 Alkaloid 7DLGT medium pass
Ppat06G0004880.7 Alkaloid 7DLGT medium pass
Ppat06G0004880.8 Alkaloid 7DLGT medium pass
Ppat10G0005130.1 Alkaloid 7DLGT medium pass
Ppat10G0005130.2 Alkaloid 7DLGT low borderline
Ppat10G0005130.3 Alkaloid 7DLGT low borderline
Ppat11G0002280.1 Alkaloid 7DLGT low borderline
Ppat11G0002280.2 Alkaloid 7DLGT low borderline
Ppat12G0008300.1 Alkaloid 7DLGT medium pass
Ppat12G0008300.2 Alkaloid 7DLGT low borderline
Ppat12G0009280.1 Alkaloid 7DLGT low borderline
Ppat12G0009280.2 Alkaloid 7DLGT low borderline
Ppat14G0007660.1 Alkaloid 7DLGT low borderline
Ppat14G0007660.2 Alkaloid 7DLGT low borderline
Ppat16G0002730.1 Alkaloid 7DLGT low borderline
Ppat16G0002730.2 Alkaloid 7DLGT low borderline
Ppat16G0002730.3 Alkaloid 7DLGT low borderline
Ppat16G0010850.1 Alkaloid 7DLGT medium pass
Ppat16G0010850.2 Alkaloid 7DLGT medium pass
Ppat20G0007660.1 Alkaloid 7DLGT low borderline
Ppat20G0007660.2 Alkaloid 7DLGT low borderline