PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

1885
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Ppat13G0004180.1 Alkaloid CODM/T6ODM medium borderline
Ppat13G0004180.2 Alkaloid CODM/T6ODM medium borderline
Ppat14G0008720.2 Alkaloid CODM/T6ODM medium borderline
Ppat14G0008720.3 Alkaloid CODM/T6ODM medium borderline
Ppat15G0001090.1 Alkaloid CODM/T6ODM low borderline
Ppat15G0010880.1 Alkaloid CODM/T6ODM medium borderline
Ppat15G0010880.2 Alkaloid CODM/T6ODM medium borderline
Ppat15G0010880.3 Alkaloid CODM/T6ODM medium borderline
Ppat15G0010880.4 Alkaloid CODM/T6ODM medium borderline
Ppat16G0002100.1 Alkaloid CODM/T6ODM medium borderline
Ppat16G0002100.2 Alkaloid CODM/T6ODM medium borderline
Ppat16G0002100.3 Alkaloid CODM/T6ODM medium borderline
Ppat16G0004150.1 Alkaloid CODM/T6ODM medium borderline
Ppat16G0004970.1 Alkaloid CODM/T6ODM medium borderline
Ppat16G0004970.2 Alkaloid CODM/T6ODM medium borderline
Ppat16G0004970.3 Alkaloid CODM/T6ODM medium borderline
Ppat16G0005010.1 Alkaloid CODM/T6ODM medium borderline
Ppat16G0006060.1 Alkaloid CODM/T6ODM medium borderline
Ppat16G0006060.2 Alkaloid CODM/T6ODM medium borderline
Ppat16G0006060.3 Alkaloid CODM/T6ODM medium borderline
Ppat16G0006650.1 Alkaloid CODM/T6ODM medium borderline
Ppat16G0006650.2 Alkaloid CODM/T6ODM medium borderline
Ppat17G0010090.1 Alkaloid CODM/T6ODM medium borderline
Ppat17G0010090.2 Alkaloid CODM/T6ODM medium borderline
Ppat17G0010090.3 Alkaloid CODM/T6ODM medium borderline
Ppat17G0010090.4 Alkaloid CODM/T6ODM medium borderline
Ppat17G0010090.5 Alkaloid CODM/T6ODM medium borderline
Ppat17G0010090.6 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002850.1 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002850.2 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002850.3 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002850.4 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002860.1 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002860.2 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002860.3 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002870.1 Alkaloid CODM/T6ODM medium borderline
Ppat18G0002870.3 Alkaloid CODM/T6ODM medium borderline
Ppat19G0001590.1 Alkaloid CODM/T6ODM low borderline
Ppat19G0001600.1 Alkaloid CODM/T6ODM low borderline
Ppat19G0009340.1 Alkaloid CODM/T6ODM medium borderline
Ppat19G0009340.2 Alkaloid CODM/T6ODM medium borderline
Ppat19G0009340.3 Alkaloid CODM/T6ODM medium borderline
Ppat19G0009340.4 Alkaloid CODM/T6ODM medium borderline
Ppat19G0009340.5 Alkaloid CODM/T6ODM medium borderline
Ppat19G0009340.6 Alkaloid CODM/T6ODM medium borderline
Ppat21G0000590.1 Alkaloid CODM/T6ODM medium borderline
Ppat21G0000590.2 Alkaloid CODM/T6ODM medium borderline
Ppat21G0000590.3 Alkaloid CODM/T6ODM medium borderline
Ppat21G0000590.4 Alkaloid CODM/T6ODM medium borderline
Ppat25G0002150.1 Alkaloid CODM/T6ODM medium borderline