PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

1885
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Ppat03G0015100.2 Alkaloid G8O/G8H medium borderline
Ppat12G0010060.1 Alkaloid G8O/G8H low borderline
Ppat12G0010060.2 Alkaloid G8O/G8H low borderline
Ppat12G0010060.3 Alkaloid G8O/G8H low borderline
Ppat16G0000280.1 Alkaloid G8O/G8H medium borderline
Ppat16G0000280.2 Alkaloid G8O/G8H medium borderline
Ppat16G0000280.3 Alkaloid G8O/G8H medium borderline
Ppat16G0011970.1 Alkaloid G8O/G8H medium borderline
Ppat20G0000520.1 Alkaloid G8O/G8H medium borderline
Ppat20G0000520.2 Alkaloid G8O/G8H medium borderline
Ppat20G0000520.3 Alkaloid G8O/G8H medium borderline
Ppat20G0000520.4 Alkaloid G8O/G8H medium borderline
Ppat20G0000530.1 Alkaloid G8O/G8H medium borderline
Ppat20G0000530.2 Alkaloid G8O/G8H medium borderline
Ppat22G0008650.1 Alkaloid G8O/G8H medium borderline
Ppat22G0008650.2 Alkaloid G8O/G8H medium borderline
Ppat25G0006540.5 Alkaloid G8O/G8H medium borderline
Ppat27G0004040.1 Alkaloid G8O/G8H medium borderline
Ppat27G0004040.2 Alkaloid G8O/G8H medium borderline
Ppat03G0001610.1 Alkaloid GES medium pass
Ppat07G0000940.1 Alkaloid GES medium pass
Ppat07G0000940.2 Alkaloid GES medium pass
Ppat07G0001060.1 Alkaloid GES medium pass
Ppat07G0001060.2 Alkaloid GES medium pass
Ppat07G0001060.3 Alkaloid GES medium pass
Ppat07G0001060.4 Alkaloid GES medium pass
Ppat07G0001060.5 Alkaloid GES medium pass
Ppat07G0001060.6 Alkaloid GES medium pass
Ppat07G0001060.7 Alkaloid GES medium pass
Ppat20G0010060.1 Alkaloid GES low borderline
Ppat01G0001930.1 Alkaloid GS low borderline
Ppat01G0001930.2 Alkaloid GS low borderline
Ppat01G0001930.3 Alkaloid GS low borderline
Ppat01G0001930.4 Alkaloid GS low borderline
Ppat01G0001930.5 Alkaloid GS low borderline
Ppat01G0019010.1 Alkaloid GS high pass
Ppat01G0019010.2 Alkaloid GS high pass
Ppat02G0005410.1 Alkaloid GS high pass
Ppat02G0005410.2 Alkaloid GS high pass
Ppat02G0005410.3 Alkaloid GS high pass
Ppat02G0018280.1 Alkaloid GS low borderline
Ppat02G0018280.2 Alkaloid GS low borderline
Ppat02G0018280.3 Alkaloid GS low borderline
Ppat02G0018310.1 Alkaloid GS low borderline
Ppat02G0018310.2 Alkaloid GS low borderline
Ppat02G0018310.3 Alkaloid GS low borderline
Ppat03G0003320.1 Alkaloid GS medium pass
Ppat03G0003320.2 Alkaloid GS medium pass
Ppat03G0003320.3 Alkaloid GS medium pass
Ppat03G0003320.4 Alkaloid GS medium pass