PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Ppat06G0007000.2 Steroid CPD/CYP90A1 low borderline
Ppat06G0007000.3 Steroid CPD/CYP90A1 low borderline
Ppat06G0007000.4 Steroid CPD/CYP90A1 low borderline
Ppat06G0007360.1 Steroid CPD/CYP90A1 medium borderline
Ppat06G0007360.2 Steroid CPD/CYP90A1 medium borderline
Ppat17G0010910.1 Steroid CPD/CYP90A1 low borderline
Ppat17G0010910.2 Steroid CPD/CYP90A1 low borderline
Ppat21G0004470.1 Steroid CPD/CYP90A1 medium borderline
Ppat21G0004470.2 Steroid CPD/CYP90A1 medium borderline
Ppat24G0007060.1 Steroid CPD/CYP90A1 medium borderline
Ppat24G0007060.2 Steroid CPD/CYP90A1 medium borderline
Ppat24G0007060.4 Steroid CPD/CYP90A1 medium borderline
Ppat24G0007060.8 Steroid CPD/CYP90A1 medium borderline
Ppat24G0007060.9 Steroid CPD/CYP90A1 medium borderline
Ppat14G0011190.1 Steroid CPI1 high pass
Ppat14G0011190.2 Steroid CPI1 high pass
Ppat14G0011190.3 Steroid CPI1 high pass
Ppat14G0011190.4 Steroid CPI1 high pass
Ppat08G0006700.1 Steroid CYP51G1 medium borderline
Ppat08G0006700.2 Steroid CYP51G1 medium borderline
Ppat16G0010940.1 Steroid CYP51G1 low borderline
Ppat16G0010940.2 Steroid CYP51G1 low borderline
Ppat16G0010940.3 Steroid CYP51G1 low borderline
Ppat25G0006540.1 Steroid CYP51G1 medium borderline
Ppat25G0006540.3 Steroid CYP51G1 medium borderline
Ppat25G0006540.4 Steroid CYP51G1 medium borderline
Ppat25G0006540.5 Steroid CYP51G1 medium borderline
Ppat02G0009180.1 Steroid CYP90D1 medium borderline
Ppat02G0009180.2 Steroid CYP90D1 medium borderline
Ppat02G0015110.1 Steroid CYP90D1 low borderline
Ppat02G0015110.2 Steroid CYP90D1 low borderline
Ppat18G0000180.1 Steroid CYP90D1 low borderline
Ppat18G0000180.2 Steroid CYP90D1 low borderline
Ppat24G0008030.1 Steroid CYP90D1 low borderline
Ppat24G0008030.2 Steroid CYP90D1 low borderline
Ppat26G0003150.1 Steroid CYP90D1 low borderline
Ppat26G0003150.2 Steroid CYP90D1 low borderline
Ppat06G0013540.1 Steroid DET2 medium pass
Ppat06G0013540.2 Steroid DET2 medium pass
Ppat13G0001840.1 Steroid DET2 low borderline
Ppat13G0001840.2 Steroid DET2 low borderline
Ppat13G0001840.3 Steroid DET2 low borderline
Ppat16G0002610.1 Steroid DET2 low borderline
Ppat16G0002610.2 Steroid DET2 low borderline
Ppat27G0001120.2 Steroid DET2 medium pass
Ppat07G0000500.1 Steroid DWF1 medium pass
Ppat07G0000500.2 Steroid DWF1 medium pass
Ppat07G0000500.3 Steroid DWF1 medium pass
Ppat07G0000500.4 Steroid DWF1 medium pass
Ppat11G0012810.1 Steroid DWF1 medium pass