PlantSME Plant secondary metabolism enzyme database

Protea cynaroides (protea_cynaroides)

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Imported from atlas release summary for Protea cynaroides.

1755
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.06% Alkaloid pathway 22.56% Phenylpropanoid pathway 22.45% Flavonoid pathway 14.19% Rosmarinic acid pathway 6.55% Steroid pathway 5.19%
Family Distribution
C4H 5.68% UGT 5.41% BAHD 5.36% C3'H/CYP98A 4.99% 7DLGT 4.81% UFGT 4.2% 4CL 4.15% POD 3.78%
Other Families 61.63%
More Families (97)
CYP76 139 3.43% IFS 131 3.23% F3H 110 2.72% CAD 97 2.4% T3O 88 2.17% NMT 87 2.15% DWF4/CYP90B1 86 2.12% F3'H/CYP75B 75 1.85% BR6OX2/CYP85A2 68 1.68% CODM/T6ODM 60 1.48% CAS 55 1.36% CSE 52 1.28% GES 51 1.26% H6H 51 1.26% TPS 51 1.26% STR 49 1.21% G8O/G8H 48 1.19% COMT 48 1.19% SMT1/SMT2/SMT3 47 1.16% HCT 45 1.11% PYKS 44 1.09% GS 44 1.09% SGD 41 1.01% LAC 41 1.01% TRI/TRII 37 0.91% RAS 37 0.91% IFR 35 0.86% SLS 34 0.84% IO 32 0.79% PMT 29 0.72% ANR 29 0.72% 8HGO 27 0.67% CYP71 27 0.67% LAMT 26 0.64% CCR 26 0.64% CYP90D1 26 0.64% 7DLH 25 0.62% CHS 24 0.59% COR 23 0.57% T16H 23 0.57% 16OMT 23 0.57% F3'5'H/CYP75A 23 0.57% BBE 20 0.49% FNS 20 0.49% F5H/CYP84A 19 0.47% TAT 19 0.47% BR6OX1/CYP85A1 17 0.42% CYP719 15 0.37% NCS 15 0.37% PAL 15 0.37% DFR 15 0.37% FPPS 14 0.35% CCoAOMT 13 0.32% HPPR 11 0.27% CPD/CYP90A1 11 0.27% MPO 10 0.25% CNMT 9 0.22% CPR 9 0.22% ROT3/CYP90C1 8 0.2% DXS 8 0.2% TYDC_DDC 7 0.17% CYP80B1 7 0.17% CYP51G1 7 0.17% GGPPS 7 0.17% XMT_MXMT_DXMT 6 0.15% ISY 6 0.15% ANS/LDOX 6 0.15% SQS/FDFT1 6 0.15% AACT 6 0.15% TDC 5 0.12% MCT/IspD 5 0.12% MVD 5 0.12% HDR/IspH 5 0.12% ADC 4 0.1% CHI 4 0.1% DET2 4 0.1% SMO1/SMO2 4 0.1% MVK 4 0.1% 6OMT_4OMT_SOMT 3 0.07% SQE 3 0.07% DWF7 3 0.07% MDS/IspF 3 0.07% DXR 3 0.07% HMGR 3 0.07% CYP80F1 2 0.05% FLS 2 0.05% FK 2 0.05% HMGS 2 0.05% HDS/IspG 2 0.05% ODC 1 0.02% HYD1 1 0.02% DWF1 1 0.02% DWF5 1 0.02% CPI1 1 0.02% PMK 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 510 19 UGT (205) View species results
Alkaloid pathway 396 22 7DLGT (91) View species results
Phenylpropanoid pathway 394 13 POD (141) View species results
Flavonoid pathway 249 11 UFGT (153) View species results
Rosmarinic acid pathway 115 7 4CL (37) View species results
Steroid pathway 91 12 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1343 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 299 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status Best Target
protea_cynaroides_KAJ4976468.1 Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
protea_cynaroides_KAJ4976739.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
protea_cynaroides_KAJ4977305.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
protea_cynaroides_KAJ4977362.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
protea_cynaroides_KAJ4979472.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
protea_cynaroides_KAJ4980624.1 Flavonoid F3H low borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
protea_cynaroides_KAJ4981043.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
protea_cynaroides_KAJ4981482.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
protea_cynaroides_KAJ4981639.1 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
protea_cynaroides_KAJ4981711.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ