Prunus mume (prunus_mume)
Imported from atlas release summary for Prunus mume.
1786
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1786
Candidate Genes
BAHD
6.03%
C4H
5.83%
C3'H/CYP98A
5.49%
UGT
4.58%
UFGT
4.54%
7DLGT
4.49%
IFS
3.75%
4CL
3.53%
Other Families
61.76%
More Families (95)
POD
142
3.48%
T3O
134
3.29%
F3H
131
3.21%
CYP76
129
3.16%
DWF4/CYP90B1
93
2.28%
SGD
92
2.26%
CAD
90
2.21%
NMT
83
2.03%
STR
73
1.79%
CODM/T6ODM
72
1.77%
H6H
63
1.54%
BR6OX2/CYP85A2
60
1.47%
GS
59
1.45%
TRI/TRII
59
1.45%
F3'H/CYP75B
59
1.45%
SMT1/SMT2/SMT3
52
1.27%
TAT
49
1.2%
HCT
47
1.15%
CAS
46
1.13%
LAC
44
1.08%
CYP71
43
1.05%
7DLH
39
0.96%
CSE
37
0.91%
CYP90D1
37
0.91%
IFR
36
0.88%
ANR
34
0.83%
COMT
34
0.83%
RAS
34
0.83%
TPS
34
0.83%
BBE
33
0.81%
GES
33
0.81%
PYKS
30
0.74%
PMT
28
0.69%
16OMT
27
0.66%
BR6OX1/CYP85A1
27
0.66%
T16H
25
0.61%
NCS
23
0.56%
SLS
22
0.54%
CCR
22
0.54%
IO
20
0.49%
LAMT
19
0.47%
FNS
19
0.47%
8HGO
15
0.37%
DFR
15
0.37%
F3'5'H/CYP75A
14
0.34%
F5H/CYP84A
14
0.34%
CPD/CYP90A1
14
0.34%
COR
12
0.29%
CNMT
10
0.25%
CYP51G1
10
0.25%
ISY
9
0.22%
CCoAOMT
9
0.22%
ROT3/CYP90C1
9
0.22%
FPPS
8
0.2%
G8O/G8H
7
0.17%
CYP719
7
0.17%
CHS
7
0.17%
HPPR
7
0.17%
AACT
7
0.17%
TYDC_DDC
6
0.15%
ANS/LDOX
6
0.15%
PAL
6
0.15%
SQS/FDFT1
6
0.15%
SMO1/SMO2
6
0.15%
MPO
5
0.12%
CPR
5
0.12%
DXS
5
0.12%
GGPPS
5
0.12%
MVD
5
0.12%
CHI
4
0.1%
DWF1
4
0.1%
SQE
4
0.1%
DET2
4
0.1%
MCT/IspD
4
0.1%
HMGR
4
0.1%
CYP80B1
3
0.07%
HDS/IspG
3
0.07%
HDR/IspH
3
0.07%
TDC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FK
2
0.05%
CPI1
2
0.05%
MVK
2
0.05%
HMGS
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
ADC
1
0.02%
FLS
1
0.02%
DWF5
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
IDI
1
0.02%
CMK/IspE
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 514 | 19 | BAHD (211) | View species results |
| Alkaloid pathway | 414 | 22 | 7DLGT (107) | View species results |
| Phenylpropanoid pathway | 352 | 11 | POD (141) | View species results |
| Flavonoid pathway | 241 | 10 | UFGT (180) | View species results |
| Rosmarinic acid pathway | 166 | 7 | C4H (57) | View species results |
| Steroid pathway | 99 | 12 | SMT1/SMT2/SMT3 (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1381 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 327 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| XP_008244242.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_008244293.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_008244479.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_008244837.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_008245603.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_008246301.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016647268.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016647571.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016648010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016648408.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016648420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016648435.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016648902.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016649066.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016649258.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016650633.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016650761.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016650830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016650831.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016651839.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_016651845.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016652272.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_016652393.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |