PlantSME Plant secondary metabolism enzyme database

Prunus mume (prunus_mume)

Imported from atlas release summary for Prunus mume.

1786
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.78% Alkaloid pathway 23.18% Phenylpropanoid pathway 19.71% Flavonoid pathway 13.49% Rosmarinic acid pathway 9.29% Steroid pathway 5.54%
Family Distribution
BAHD 6.03% C4H 5.83% C3'H/CYP98A 5.49% UGT 4.58% UFGT 4.54% 7DLGT 4.49% IFS 3.75% 4CL 3.53%
Other Families 61.76%
More Families (95)
POD 142 3.48% T3O 134 3.29% F3H 131 3.21% CYP76 129 3.16% DWF4/CYP90B1 93 2.28% SGD 92 2.26% CAD 90 2.21% NMT 83 2.03% STR 73 1.79% CODM/T6ODM 72 1.77% H6H 63 1.54% BR6OX2/CYP85A2 60 1.47% GS 59 1.45% TRI/TRII 59 1.45% F3'H/CYP75B 59 1.45% SMT1/SMT2/SMT3 52 1.27% TAT 49 1.2% HCT 47 1.15% CAS 46 1.13% LAC 44 1.08% CYP71 43 1.05% 7DLH 39 0.96% CSE 37 0.91% CYP90D1 37 0.91% IFR 36 0.88% ANR 34 0.83% COMT 34 0.83% RAS 34 0.83% TPS 34 0.83% BBE 33 0.81% GES 33 0.81% PYKS 30 0.74% PMT 28 0.69% 16OMT 27 0.66% BR6OX1/CYP85A1 27 0.66% T16H 25 0.61% NCS 23 0.56% SLS 22 0.54% CCR 22 0.54% IO 20 0.49% LAMT 19 0.47% FNS 19 0.47% 8HGO 15 0.37% DFR 15 0.37% F3'5'H/CYP75A 14 0.34% F5H/CYP84A 14 0.34% CPD/CYP90A1 14 0.34% COR 12 0.29% CNMT 10 0.25% CYP51G1 10 0.25% ISY 9 0.22% CCoAOMT 9 0.22% ROT3/CYP90C1 9 0.22% FPPS 8 0.2% G8O/G8H 7 0.17% CYP719 7 0.17% CHS 7 0.17% HPPR 7 0.17% AACT 7 0.17% TYDC_DDC 6 0.15% ANS/LDOX 6 0.15% PAL 6 0.15% SQS/FDFT1 6 0.15% SMO1/SMO2 6 0.15% MPO 5 0.12% CPR 5 0.12% DXS 5 0.12% GGPPS 5 0.12% MVD 5 0.12% CHI 4 0.1% DWF1 4 0.1% SQE 4 0.1% DET2 4 0.1% MCT/IspD 4 0.1% HMGR 4 0.1% CYP80B1 3 0.07% HDS/IspG 3 0.07% HDR/IspH 3 0.07% TDC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% FK 2 0.05% CPI1 2 0.05% MVK 2 0.05% HMGS 2 0.05% DXR 2 0.05% ODC 1 0.02% ADC 1 0.02% FLS 1 0.02% DWF5 1 0.02% DWF7 1 0.02% HYD1 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02% MDS/IspF 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 514 19 BAHD (211) View species results
Alkaloid pathway 414 22 7DLGT (107) View species results
Phenylpropanoid pathway 352 11 POD (141) View species results
Flavonoid pathway 241 10 UFGT (180) View species results
Rosmarinic acid pathway 166 7 C4H (57) View species results
Steroid pathway 99 12 SMT1/SMT2/SMT3 (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1381 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 327 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
XP_016649240.1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
XP_016649241.1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
XP_016649242.1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
XP_016649755.1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
XP_016651191.1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
XP_016651284.1 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
XP_016651285.1 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
XP_016651286.1 Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
XP_016652789.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB