PlantSME Plant secondary metabolism enzyme database

Pyrus ussuriensis x communis (pyrus_ussuriensis_x_communis)

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Imported from atlas release summary for Pyrus ussuriensis x communis.

2168
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.55% Alkaloid pathway 23.29% Phenylpropanoid pathway 20.3% Flavonoid pathway 13.24% Rosmarinic acid pathway 9.04% Steroid pathway 5.58%
Family Distribution
C4H 5.84% C3'H/CYP98A 5.84% BAHD 5.23% UGT 4.62% 7DLGT 4.3% UFGT 4.11% IFS 3.79% CYP76 3.62%
Other Families 62.64%
More Families (96)
POD 181 3.43% T3O 167 3.17% F3H 165 3.13% 4CL 162 3.07% DWF4/CYP90B1 112 2.12% NMT 105 1.99% H6H 104 1.97% BR6OX2/CYP85A2 101 1.91% CAD 98 1.86% F3'H/CYP75B 92 1.74% CODM/T6ODM 80 1.52% STR 76 1.44% CAS 72 1.36% CSE 65 1.23% GS 64 1.21% COMT 64 1.21% CYP71 63 1.19% LAC 61 1.16% TAT 61 1.16% TRI/TRII 60 1.14% SGD 56 1.06% PYKS 55 1.04% HCT 54 1.02% CYP90D1 52 0.99% TPS 51 0.97% IO 50 0.95% 7DLH 48 0.91% GES 48 0.91% IFR 48 0.91% SMT1/SMT2/SMT3 42 0.8% 16OMT 39 0.74% RAS 38 0.72% PMT 37 0.7% COR 34 0.64% ANR 34 0.64% BR6OX1/CYP85A1 34 0.64% SLS 33 0.63% F3'5'H/CYP75A 33 0.63% T16H 31 0.59% FNS 30 0.57% F5H/CYP84A 30 0.57% CCR 30 0.57% G8O/G8H 28 0.53% NCS 26 0.49% LAMT 24 0.45% DFR 22 0.42% SQE 20 0.38% CHS 18 0.34% CYP51G1 18 0.34% BBE 17 0.32% 8HGO 16 0.3% PAL 15 0.28% ROT3/CYP90C1 15 0.28% ANS/LDOX 12 0.23% CPR 12 0.23% AACT 11 0.21% ISY 10 0.19% HPPR 10 0.19% CPD/CYP90A1 10 0.19% MPO 9 0.17% GGPPS 9 0.17% SQS/FDFT1 8 0.15% CNMT 7 0.13% CYP719 7 0.13% CCoAOMT 7 0.13% FPPS 7 0.13% TYDC_DDC 6 0.11% 6OMT_4OMT_SOMT 6 0.11% CHI 6 0.11% HMGR 6 0.11% MVD 6 0.11% CYP80B1 5 0.09% TDC 5 0.09% HYD1 5 0.09% DXS 5 0.09% DXR 5 0.09% ADC 4 0.08% DET2 4 0.08% PMK 4 0.08% HDR/IspH 4 0.08% MDS/IspF 4 0.08% FLS 3 0.06% DWF5 3 0.06% SMO1/SMO2 3 0.06% FK 3 0.06% CYP80F1 2 0.04% ODC 2 0.04% CPI1 2 0.04% DWF7 2 0.04% MCT/IspD 2 0.04% MVK 2 0.04% HMGS 2 0.04% IDI 2 0.04% CMK/IspE 2 0.04% DWF1 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 619 19 UGT (231) View species results
Alkaloid pathway 505 23 7DLGT (124) View species results
Phenylpropanoid pathway 440 11 POD (167) View species results
Flavonoid pathway 287 11 UFGT (201) View species results
Rosmarinic acid pathway 196 7 C4H (74) View species results
Steroid pathway 121 12 CAS (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1938 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 368 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
pyrus_ussuriensis_x_communis_Pdr7g000410.1 Alkaloid SGD medium pass
pyrus_ussuriensis_x_communis_Pdr8g017120.1 Alkaloid SGD medium pass
pyrus_ussuriensis_x_communis_Pdr8g017150.1 Alkaloid SGD low borderline
pyrus_ussuriensis_x_communis_Pdr9g003210.1 Alkaloid SGD medium pass
pyrus_ussuriensis_x_communis_Pdr9g003220.1 Alkaloid SGD medium pass
pyrus_ussuriensis_x_communis_Pdr9g006120.1 Alkaloid SGD medium pass