Pyrus ussuriensis x communis (pyrus_ussuriensis_x_communis)
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Imported from atlas release summary for Pyrus ussuriensis x communis.
2168
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2168
Candidate Genes
C4H
5.84%
C3'H/CYP98A
5.84%
BAHD
5.23%
UGT
4.62%
7DLGT
4.3%
UFGT
4.11%
IFS
3.79%
CYP76
3.62%
Other Families
62.64%
More Families (96)
POD
181
3.43%
T3O
167
3.17%
F3H
165
3.13%
4CL
162
3.07%
DWF4/CYP90B1
112
2.12%
NMT
105
1.99%
H6H
104
1.97%
BR6OX2/CYP85A2
101
1.91%
CAD
98
1.86%
F3'H/CYP75B
92
1.74%
CODM/T6ODM
80
1.52%
STR
76
1.44%
CAS
72
1.36%
CSE
65
1.23%
GS
64
1.21%
COMT
64
1.21%
CYP71
63
1.19%
LAC
61
1.16%
TAT
61
1.16%
TRI/TRII
60
1.14%
SGD
56
1.06%
PYKS
55
1.04%
HCT
54
1.02%
CYP90D1
52
0.99%
TPS
51
0.97%
IO
50
0.95%
7DLH
48
0.91%
GES
48
0.91%
IFR
48
0.91%
SMT1/SMT2/SMT3
42
0.8%
16OMT
39
0.74%
RAS
38
0.72%
PMT
37
0.7%
COR
34
0.64%
ANR
34
0.64%
BR6OX1/CYP85A1
34
0.64%
SLS
33
0.63%
F3'5'H/CYP75A
33
0.63%
T16H
31
0.59%
FNS
30
0.57%
F5H/CYP84A
30
0.57%
CCR
30
0.57%
G8O/G8H
28
0.53%
NCS
26
0.49%
LAMT
24
0.45%
DFR
22
0.42%
SQE
20
0.38%
CHS
18
0.34%
CYP51G1
18
0.34%
BBE
17
0.32%
8HGO
16
0.3%
PAL
15
0.28%
ROT3/CYP90C1
15
0.28%
ANS/LDOX
12
0.23%
CPR
12
0.23%
AACT
11
0.21%
ISY
10
0.19%
HPPR
10
0.19%
CPD/CYP90A1
10
0.19%
MPO
9
0.17%
GGPPS
9
0.17%
SQS/FDFT1
8
0.15%
CNMT
7
0.13%
CYP719
7
0.13%
CCoAOMT
7
0.13%
FPPS
7
0.13%
TYDC_DDC
6
0.11%
6OMT_4OMT_SOMT
6
0.11%
CHI
6
0.11%
HMGR
6
0.11%
MVD
6
0.11%
CYP80B1
5
0.09%
TDC
5
0.09%
HYD1
5
0.09%
DXS
5
0.09%
DXR
5
0.09%
ADC
4
0.08%
DET2
4
0.08%
PMK
4
0.08%
HDR/IspH
4
0.08%
MDS/IspF
4
0.08%
FLS
3
0.06%
DWF5
3
0.06%
SMO1/SMO2
3
0.06%
FK
3
0.06%
CYP80F1
2
0.04%
ODC
2
0.04%
CPI1
2
0.04%
DWF7
2
0.04%
MCT/IspD
2
0.04%
MVK
2
0.04%
HMGS
2
0.04%
IDI
2
0.04%
CMK/IspE
2
0.04%
DWF1
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 619 | 19 | UGT (231) | View species results |
| Alkaloid pathway | 505 | 23 | 7DLGT (124) | View species results |
| Phenylpropanoid pathway | 440 | 11 | POD (167) | View species results |
| Flavonoid pathway | 287 | 11 | UFGT (201) | View species results |
| Rosmarinic acid pathway | 196 | 7 | C4H (74) | View species results |
| Steroid pathway | 121 | 12 | CAS (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1938 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 368 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| pyrus_ussuriensis_x_communis_Pdr3g003290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr3g003310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr3g005790.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| pyrus_ussuriensis_x_communis_Pdr3g006440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr3g007310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr3g007340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr3g012350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr3g013720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr4g002710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr4g003270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr4g004490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr4g009950.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr4g016830.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| pyrus_ussuriensis_x_communis_Pdr5g004220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr5g004270.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr5g004280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr5g014500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr5g014540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr7g013460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr7g021150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr8g006790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr8g009850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr8g010350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr8g017240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr8g017250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| pyrus_ussuriensis_x_communis_Pdr9g017130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |