PlantSME Plant secondary metabolism enzyme database

Quercus robur (quercus_robur)

Imported from atlas release summary for Quercus robur.

2031
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.95% Alkaloid pathway 24.72% Phenylpropanoid pathway 17.97% Flavonoid pathway 15.31% Rosmarinic acid pathway 6.75% Steroid pathway 6.3%
Family Distribution
C4H 7.06% C3'H/CYP98A 6.22% UGT 5.7% 7DLGT 5.28% UFGT 5.14% CYP76 4.32% BAHD 4.03% IFS 3.76%
Other Families 58.49%
More Families (95)
POD 164 3.42% T3O 156 3.26% DWF4/CYP90B1 126 2.63% F3H 112 2.34% F3'H/CYP75B 105 2.19% CAD 101 2.11% 4CL 96 2.0% CAS 96 2.0% BR6OX2/CYP85A2 81 1.69% CODM/T6ODM 79 1.65% LAC 72 1.5% STR 69 1.44% TPS 69 1.44% TRI/TRII 68 1.42% GES 66 1.38% CYP71 62 1.29% NMT 60 1.25% H6H 57 1.19% T16H 57 1.19% G8O/G8H 56 1.17% SGD 51 1.06% IFR 50 1.04% SMT1/SMT2/SMT3 45 0.94% F3'5'H/CYP75A 42 0.88% FNS 40 0.84% IO 37 0.77% GS 36 0.75% CYP90D1 35 0.73% BR6OX1/CYP85A1 33 0.69% LAMT 31 0.65% HCT 31 0.65% NCS 30 0.63% COMT 30 0.63% 7DLH 29 0.61% BBE 28 0.58% CSE 25 0.52% 8HGO 24 0.5% DFR 23 0.48% PMT 22 0.46% F5H/CYP84A 22 0.46% ANR 21 0.44% PYKS 20 0.42% SLS 20 0.42% RAS 19 0.4% CCR 18 0.38% CPD/CYP90A1 18 0.38% 16OMT 17 0.35% COR 16 0.33% ANS/LDOX 16 0.33% TAT 16 0.33% MPO 14 0.29% CYP51G1 13 0.27% CYP719 12 0.25% CCoAOMT 12 0.25% ISY 11 0.23% CNMT 10 0.21% 6OMT_4OMT_SOMT 8 0.17% TYDC_DDC 8 0.17% HPPR 8 0.17% ROT3/CYP90C1 8 0.17% SQE 7 0.15% GGPPS 7 0.15% PAL 6 0.13% XMT_MXMT_DXMT 5 0.1% CHS 5 0.1% SQS/FDFT1 5 0.1% HDR/IspH 5 0.1% CYP80B1 4 0.08% CPR 4 0.08% DET2 4 0.08% FPPS 4 0.08% AACT 4 0.08% MVD 4 0.08% DXS 3 0.06% MCT/IspD 3 0.06% MVK 3 0.06% TDC 2 0.04% CYP80F1 2 0.04% CHI 2 0.04% FLS 2 0.04% SMO1/SMO2 2 0.04% HMGR 2 0.04% PMK 2 0.04% MDS/IspF 2 0.04% ODC 1 0.02% ADC 1 0.02% DWF1 1 0.02% HYD1 1 0.02% DWF5 1 0.02% FK 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% CMK/IspE 1 0.02% HMGS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 588 18 UGT (258) View species results
Alkaloid pathway 502 26 7DLGT (143) View species results
Phenylpropanoid pathway 365 12 POD (151) View species results
Flavonoid pathway 311 12 UFGT (231) View species results
Rosmarinic acid pathway 137 7 C4H (76) View species results
Steroid pathway 128 12 CAS (82) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1941 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 243 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Qrob11G0014040 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Qrob12G0005510 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Qrob12G0007170 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Qrob12G0012000 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
QrobQrob_H2.3_Sc00000300002200 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
QrobQrob_H2.3_Sc00003380011920 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
QrobQrob_H2.3_Sc00003800012750 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
QrobQrob_H2.3_Sc00005620016880 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
QrobQrob_H2.3_Sc00007590020280 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
QrobQrob_H2.3_Sc00008640022060 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC