Quercus rubra (quercus_rubra)
/
Imported from atlas release summary for Quercus rubra.
2753
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2753
Candidate Genes
C4H
6.14%
C3'H/CYP98A
6.1%
UGT
5.8%
7DLGT
5.64%
UFGT
5.5%
BAHD
4.94%
CYP76
4.01%
T3O
3.77%
Other Families
58.1%
More Families (98)
IFS
229
3.66%
POD
198
3.16%
DWF4/CYP90B1
167
2.67%
F3H
154
2.46%
4CL
147
2.35%
CAD
136
2.17%
F3'H/CYP75B
120
1.92%
CAS
116
1.85%
BR6OX2/CYP85A2
111
1.77%
TRI/TRII
102
1.63%
CODM/T6ODM
93
1.49%
STR
85
1.36%
GES
82
1.31%
SMT1/SMT2/SMT3
81
1.29%
TPS
81
1.29%
NMT
77
1.23%
LAC
77
1.23%
H6H
72
1.15%
CYP71
69
1.1%
COMT
65
1.04%
SGD
63
1.01%
HCT
59
0.94%
CYP90D1
56
0.89%
GS
52
0.83%
FNS
52
0.83%
16OMT
51
0.81%
TAT
51
0.81%
IFR
50
0.8%
7DLH
48
0.77%
T16H
45
0.72%
G8O/G8H
43
0.69%
LAMT
43
0.69%
BR6OX1/CYP85A1
40
0.64%
CSE
39
0.62%
F3'5'H/CYP75A
38
0.61%
IO
35
0.56%
BBE
33
0.53%
PYKS
32
0.51%
NCS
32
0.51%
RAS
32
0.51%
PMT
31
0.5%
F5H/CYP84A
31
0.5%
8HGO
25
0.4%
ANR
23
0.37%
SLS
22
0.35%
CCoAOMT
21
0.34%
CPD/CYP90A1
21
0.34%
CCR
20
0.32%
CYP51G1
20
0.32%
COR
19
0.3%
CNMT
15
0.24%
PAL
15
0.24%
ROT3/CYP90C1
15
0.24%
MPO
13
0.21%
TYDC_DDC
13
0.21%
ISY
12
0.19%
HPPR
12
0.19%
CYP719
10
0.16%
GGPPS
10
0.16%
ANS/LDOX
9
0.14%
DFR
9
0.14%
SQS/FDFT1
9
0.14%
CHS
8
0.13%
FPPS
7
0.11%
XMT_MXMT_DXMT
6
0.1%
AACT
6
0.1%
CPR
5
0.08%
DET2
5
0.08%
HMGR
5
0.08%
DXS
5
0.08%
CYP80B1
4
0.06%
CYP80F1
4
0.06%
CHI
4
0.06%
SQE
4
0.06%
MVK
4
0.06%
FLS
3
0.05%
MCT/IspD
3
0.05%
MVD
3
0.05%
DXR
3
0.05%
HDR/IspH
3
0.05%
TDC
2
0.03%
SMO1/SMO2
2
0.03%
CPI1
2
0.03%
DWF7
2
0.03%
HMGS
2
0.03%
ODC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
ADC
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
GPPS
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 809 | 20 | UGT (351) | View species results |
| Alkaloid pathway | 649 | 21 | 7DLGT (195) | View species results |
| Phenylpropanoid pathway | 494 | 11 | POD (190) | View species results |
| Flavonoid pathway | 410 | 11 | UFGT (324) | View species results |
| Rosmarinic acid pathway | 209 | 7 | C4H (91) | View species results |
| Steroid pathway | 182 | 12 | CAS (102) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2381 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 400 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| quercus_rubra_Qurub.09G042300.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| quercus_rubra_Qurub.09G105700.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| quercus_rubra_Qurub.09G105800.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| quercus_rubra_Qurub.09G106300.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| quercus_rubra_Qurub.09G125400.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| quercus_rubra_Qurub.09G125500.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| quercus_rubra_Qurub.09G127200.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| quercus_rubra_Qurub.09G131000.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| quercus_rubra_Qurub.09G147700.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| quercus_rubra_Qurub.09G154800.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| quercus_rubra_Qurub.09G180000.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| quercus_rubra_Qurub.10G000800.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| quercus_rubra_Qurub.10G070300.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| quercus_rubra_Qurub.10G106300.1 | Alkaloid | NMT | medium | pass | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| quercus_rubra_Qurub.10G106400.1 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| quercus_rubra_Qurub.10G232800.1 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| quercus_rubra_Qurub.11G014400.1 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| quercus_rubra_Qurub.12G042200.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| quercus_rubra_Qurub.12G051400.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| quercus_rubra_Qurub.12G081200.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| quercus_rubra_Qurub.12G081900.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| quercus_rubra_Qurub.12G106900.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| quercus_rubra_Qurub.12G153100.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| quercus_rubra_Qurub.12G164200.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| quercus_rubra_Qurub.M060400.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| quercus_rubra_Qurub.M084700.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| quercus_rubra_Qurub.M226300.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |