PlantSME Plant secondary metabolism enzyme database

Regmatodon serrulatus (regmatodon_serrulatus)

Imported from atlas release summary for Regmatodon serrulatus.

620
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.77% Terpenoid pathway 23.71% Alkaloid pathway 20.32% Flavonoid pathway 14.03% Rosmarinic acid pathway 9.68% Steroid pathway 5.48%
Family Distribution
C4H 6.94% POD 5.62% C3'H/CYP98A 5.56% BAHD 5.43% 4CL 4.89% CYP76 4.17% NMT 3.74% IFS 3.26%
Other Families 60.39%
More Families (95)
PAL 42 2.54% F3H 40 2.42% T3O 39 2.36% DWF4/CYP90B1 38 2.29% IFR 37 2.23% STR 35 2.11% F3'H/CYP75B 34 2.05% BR6OX2/CYP85A2 34 2.05% UGT 34 2.05% GS 33 1.99% UFGT 31 1.87% 7DLGT 30 1.81% CODM/T6ODM 29 1.75% PYKS 25 1.51% G8O/G8H 24 1.45% SMT1/SMT2/SMT3 20 1.21% COMT 19 1.15% CAD 18 1.09% CYP71 18 1.09% TRI/TRII 17 1.03% F3'5'H/CYP75A 17 1.03% H6H 16 0.97% SLS 15 0.91% CHS 14 0.85% IO 13 0.79% T16H 13 0.79% CAS 13 0.79% CYP90D1 12 0.72% 7DLH 11 0.66% 16OMT 11 0.66% FNS 11 0.66% CSE 11 0.66% CPD/CYP90A1 11 0.66% NCS 10 0.6% RAS 10 0.6% HCT 9 0.54% LAC 9 0.54% CNMT 8 0.48% 8HGO 8 0.48% SGD 8 0.48% TDC 7 0.42% PMT 7 0.42% LAMT 7 0.42% COR 7 0.42% SQS/FDFT1 7 0.42% BBE 6 0.36% CCR 6 0.36% F5H/CYP84A 6 0.36% AACT 6 0.36% MPO 5 0.3% DFR 5 0.3% ANR 5 0.3% CPR 5 0.3% GGPPS 5 0.3% CYP719 4 0.24% CYP80B1 4 0.24% CHI 4 0.24% TAT 4 0.24% ROT3/CYP90C1 4 0.24% BR6OX1/CYP85A1 4 0.24% DWF5 4 0.24% MVD 4 0.24% FLS 3 0.18% ANS/LDOX 3 0.18% DET2 3 0.18% SQE 3 0.18% HDS/IspG 3 0.18% MVK 3 0.18% ADC 2 0.12% TYDC_DDC 2 0.12% GES 2 0.12% 6OMT_4OMT_SOMT 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% CYP51G1 2 0.12% SMO1/SMO2 2 0.12% MCT/IspD 2 0.12% FPPS 2 0.12% HDR/IspH 2 0.12% TPS 2 0.12% XMT_MXMT_DXMT 1 0.06% ISY 1 0.06% HYD1 1 0.06% DWF7 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF1 1 0.06% MDS/IspF 1 0.06% GPPS 1 0.06% DXS 1 0.06% IDI 1 0.06% DXR 1 0.06% HMGS 1 0.06% HMGR 1 0.06% CMK/IspE 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 166 11 POD (87) View species results
Terpenoid pathway 147 18 BAHD (57) View species results
Alkaloid pathway 126 20 NMT (25) View species results
Flavonoid pathway 87 14 UFGT (28) View species results
Rosmarinic acid pathway 60 6 C4H (21) View species results
Steroid pathway 34 12 CAS (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Rser1585050203420 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Rser1585050203440 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Rser1585400212490 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Rser1585580216660 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
Rser1585580216910 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Rser1585660218350 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Rser1585810222130 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Rser1585830223730 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Rser1585890225020 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Rser1586020228970 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Rser1587060249550 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Rser1587160251620 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH