PlantSME Plant secondary metabolism enzyme database

Rhododendron delavayi (rhododendron_delavayi)

Imported from atlas release summary for Rhododendron delavayi.

1784
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.66% Alkaloid pathway 22.31% Phenylpropanoid pathway 16.59% Flavonoid pathway 15.47% Rosmarinic acid pathway 9.47% Steroid pathway 5.49%
Family Distribution
C4H 6.56% C3'H/CYP98A 5.87% UGT 5.72% 7DLGT 5.27% UFGT 5.27% BAHD 5.2% IFS 4.0% CYP76 3.76%
Other Families 58.36%
More Families (97)
4CL 135 3.23% T3O 133 3.18% POD 121 2.9% F3H 112 2.68% DWF4/CYP90B1 93 2.23% CAD 83 1.99% CODM/T6ODM 78 1.87% STR 74 1.77% F3'H/CYP75B 72 1.72% BR6OX2/CYP85A2 68 1.63% NMT 66 1.58% CAS 63 1.51% LAC 56 1.34% GS 53 1.27% TPS 50 1.2% H6H 48 1.15% GES 46 1.1% HCT 46 1.1% CYP90D1 44 1.05% T16H 43 1.03% RAS 43 1.03% CYP71 42 1.01% IO 40 0.96% SMT1/SMT2/SMT3 35 0.84% PYKS 32 0.77% CSE 32 0.77% BR6OX1/CYP85A1 32 0.77% TRI/TRII 31 0.74% SGD 30 0.72% TAT 30 0.72% IFR 28 0.67% BBE 24 0.57% ANR 24 0.57% SLS 23 0.55% G8O/G8H 22 0.53% FNS 22 0.53% CCR 22 0.53% 7DLH 21 0.5% 8HGO 21 0.5% F3'5'H/CYP75A 21 0.5% COMT 21 0.5% 16OMT 19 0.45% F5H/CYP84A 19 0.45% PMT 15 0.36% CPD/CYP90A1 14 0.34% CHS 13 0.31% DFR 13 0.31% ANS/LDOX 13 0.31% COR 12 0.29% NCS 12 0.29% ROT3/CYP90C1 12 0.29% HPPR 11 0.26% CYP51G1 11 0.26% GGPPS 10 0.24% CYP719 9 0.22% LAMT 9 0.22% CNMT 9 0.22% CYP80B1 9 0.22% PAL 9 0.22% CCoAOMT 8 0.19% AACT 8 0.19% MPO 7 0.17% CHI 7 0.17% MVD 7 0.17% ISY 6 0.14% FLS 6 0.14% DET2 6 0.14% HDR/IspH 6 0.14% ODC 5 0.12% CPR 5 0.12% SQS/FDFT1 5 0.12% HMGS 5 0.12% TDC 4 0.1% SQE 4 0.1% DXS 4 0.1% HMGR 4 0.1% FPPS 4 0.1% DWF1 3 0.07% SMO1/SMO2 3 0.07% DWF7 3 0.07% MCT/IspD 3 0.07% MVK 3 0.07% CYP80F1 2 0.05% 6OMT_4OMT_SOMT 2 0.05% FK 2 0.05% DWF5 2 0.05% PMK 2 0.05% GPPS 2 0.05% CMK/IspE 2 0.05% ADC 1 0.02% TYDC_DDC 1 0.02% HYD1 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 547 19 UGT (227) View species results
Alkaloid pathway 398 24 7DLGT (109) View species results
Phenylpropanoid pathway 296 11 POD (109) View species results
Flavonoid pathway 276 12 UFGT (203) View species results
Rosmarinic acid pathway 169 7 C4H (83) View species results
Steroid pathway 98 12 CAS (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1573 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 306 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Rdelscaffold2877330186170 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold3290222010 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold34720225090 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold37100233530 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold390239650 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold40250244650 Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
Rdelscaffold40630245140 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold40870247140 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold41930252480 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold4350255820 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold493050264860 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold493050264890 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold500265510 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold55870272290 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold6080280130 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold6080280140 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold64380290050 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold6750292820 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold7240301370 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold72970303370 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Rdelscaffold72970303440 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Rdelscaffold7880309850 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold78810311890 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rdelscaffold91380321400 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR