PlantSME Plant secondary metabolism enzyme database

Rhododendron griersonianum (rhododendron_griersonianum)

Imported from atlas release summary for Rhododendron griersonianum.

2062
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.56% Alkaloid pathway 21.58% Phenylpropanoid pathway 19.01% Rosmarinic acid pathway 10.67% Flavonoid pathway 9.26% Steroid pathway 5.92%
Family Distribution
C4H 6.22% C3'H/CYP98A 5.91% BAHD 5.72% UGT 4.56% 4CL 4.05% CYP76 3.92% IFS 3.68% 7DLGT 3.48%
Other Families 62.46%
More Families (97)
POD 187 3.32% F3H 180 3.2% T3O 167 2.97% F3'H/CYP75B 131 2.33% DWF4/CYP90B1 130 2.31% NMT 129 2.29% UFGT 121 2.15% STR 116 2.06% CAD 109 1.94% BR6OX2/CYP85A2 108 1.92% CODM/T6ODM 105 1.86% H6H 86 1.53% CAS 81 1.44% GS 72 1.28% LAC 68 1.21% CYP71 66 1.17% IFR 65 1.15% TPS 64 1.14% TRI/TRII 59 1.05% GES 59 1.05% SGD 56 0.99% HCT 55 0.98% G8O/G8H 52 0.92% CSE 52 0.92% CYP90D1 52 0.92% IO 49 0.87% SMT1/SMT2/SMT3 49 0.87% RAS 46 0.82% 7DLH 44 0.78% T16H 43 0.76% PYKS 40 0.71% ANR 40 0.71% TAT 40 0.71% BR6OX1/CYP85A1 37 0.66% SLS 34 0.6% F5H/CYP84A 34 0.6% BBE 33 0.59% F3'5'H/CYP75A 33 0.59% COMT 33 0.59% 8HGO 30 0.53% FNS 28 0.5% PMT 27 0.48% CPD/CYP90A1 26 0.46% COR 24 0.43% CCR 23 0.41% 16OMT 21 0.37% CYP51G1 21 0.37% CYP80B1 19 0.34% DFR 19 0.34% MPO 17 0.3% AACT 17 0.3% CHS 16 0.28% NCS 15 0.27% LAMT 15 0.27% ANS/LDOX 14 0.25% CCoAOMT 14 0.25% PAL 12 0.21% ROT3/CYP90C1 12 0.21% HDR/IspH 12 0.21% GGPPS 12 0.21% CPR 11 0.2% SQS/FDFT1 11 0.2% DWF1 11 0.2% FPPS 11 0.2% CNMT 10 0.18% MVD 10 0.18% TYDC_DDC 9 0.16% HPPR 9 0.16% CHI 8 0.14% SQE 7 0.12% DXS 7 0.12% HMGS 7 0.12% CYP719 6 0.11% SMO1/SMO2 6 0.11% HDS/IspG 6 0.11% ODC 5 0.09% MVK 5 0.09% ISY 4 0.07% CYP80F1 4 0.07% DWF7 4 0.07% DET2 4 0.07% FK 4 0.07% IDI 4 0.07% MCT/IspD 4 0.07% HMGR 4 0.07% PMK 4 0.07% GPPS 4 0.07% ADC 3 0.05% TDC 3 0.05% 6OMT_4OMT_SOMT 3 0.05% FLS 3 0.05% HYD1 2 0.04% XMT_MXMT_DXMT 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 692 21 BAHD (248) View species results
Alkaloid pathway 445 25 7DLGT (62) View species results
Phenylpropanoid pathway 392 12 POD (150) View species results
Rosmarinic acid pathway 220 7 C4H (104) View species results
Flavonoid pathway 191 13 UFGT (87) View species results
Steroid pathway 122 12 CAS (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2179 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 423 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
KAG5561428.1_rhododendron_griersonianum Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
KAG5561429.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
KAG5561430.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
KAG5561432.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
KAG5561434.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
KAG5561538.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
KAG5561541.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
KAG5561552.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
KAG5567579.1_rhododendron_griersonianum Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH