PlantSME Plant secondary metabolism enzyme database

Sapria himalayana (sapria_himalayana)

Imported from atlas release summary for Sapria himalayana.

374
Candidate Genes
96
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Alkaloid pathway 28.88% Terpenoid pathway 27.54% Phenylpropanoid pathway 21.12% Flavonoid pathway 8.82% Rosmarinic acid pathway 7.22% Steroid pathway 6.42%
Family Distribution
BAHD 8.05% NMT 6.38% 8HGO 5.59% C4H 4.7% 4CL 4.03% C3'H/CYP98A 3.58% POD 3.47% UGT 2.91%
Other Families 61.3%
More Families (88)
TPS 25 2.8% UFGT 24 2.68% 7DLGT 23 2.57% F3H 22 2.46% CYP76 20 2.24% IFS 19 2.13% LAC 18 2.01% CAD 18 2.01% DWF4/CYP90B1 18 2.01% STR 17 1.9% GES 17 1.9% T3O 16 1.79% H6H 15 1.68% BR6OX2/CYP85A2 14 1.57% SMT1/SMT2/SMT3 12 1.34% CAS 12 1.34% F3'H/CYP75B 11 1.23% CYP71 11 1.23% CODM/T6ODM 9 1.01% GS 9 1.01% PYKS 8 0.89% IFR 8 0.89% CSE 8 0.89% IO 7 0.78% MPO 7 0.78% TAT 7 0.78% ROT3/CYP90C1 7 0.78% BR6OX1/CYP85A1 7 0.78% TRI/TRII 6 0.67% BBE 6 0.67% COMT 6 0.67% T16H 5 0.56% 16OMT 5 0.56% SLS 5 0.56% F3'5'H/CYP75A 5 0.56% HCT 5 0.56% CPR 5 0.56% PMT 4 0.45% G8O/G8H 4 0.45% 7DLH 4 0.45% DFR 4 0.45% CNMT 3 0.34% TDC 3 0.34% 6OMT_4OMT_SOMT 3 0.34% TYDC_DDC 3 0.34% SGD 3 0.34% ANR 3 0.34% PAL 3 0.34% F5H/CYP84A 3 0.34% CCR 3 0.34% RAS 3 0.34% CYP90D1 3 0.34% HYD1 3 0.34% CYP51G1 3 0.34% SQE 3 0.34% FK 3 0.34% CPI1 3 0.34% NCS 2 0.22% ADC 2 0.22% CHS 2 0.22% FNS 2 0.22% CHI 2 0.22% CCoAOMT 2 0.22% HPPR 2 0.22% SQS/FDFT1 2 0.22% SMO1/SMO2 2 0.22% DET2 2 0.22% DWF1 2 0.22% AACT 2 0.22% GGPPS 2 0.22% IDI 2 0.22% FPPS 2 0.22% PMK 2 0.22% ISY 1 0.11% LAMT 1 0.11% CYP719 1 0.11% ANS/LDOX 1 0.11% CPD/CYP90A1 1 0.11% DWF7 1 0.11% DWF5 1 0.11% HMGR 1 0.11% MVK 1 0.11% MDS/IspF 1 0.11% MVD 1 0.11% GPPS 1 0.11% DXR 1 0.11% HMGS 1 0.11% CMK/IspE 1 0.11%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Alkaloid pathway 108 16 NMT (39) View species results
Terpenoid pathway 103 12 BAHD (43) View species results
Phenylpropanoid pathway 79 10 POD (27) View species results
Flavonoid pathway 33 6 UFGT (19) View species results
Rosmarinic acid pathway 27 7 4CL (7) View species results
Steroid pathway 24 11 CAS (7) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 22 238 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 80 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status Best Target
sapria_himalayana_SHI12490-RA Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
sapria_himalayana_SHI02612-RA Rosmarinic Acid RAS medium pass RAS__00002__sp_G0LD36_RAS_MELOI
sapria_himalayana_SHI11302-RA Rosmarinic Acid RAS medium pass RAS__00001__sp_A0PDV5_RAS_PLESU
sapria_himalayana_SHI24975-RA Rosmarinic Acid RAS low borderline RAS__00001__sp_A0PDV5_RAS_PLESU
sapria_himalayana_SHI01030-RA Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
sapria_himalayana_SHI03035-RA Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
sapria_himalayana_SHI09701-RA Rosmarinic Acid TAT low borderline TAT__00002__sp_Q9C969_ISS1_ARATH
sapria_himalayana_SHI09705-RA Rosmarinic Acid TAT medium pass TAT__00002__sp_Q9C969_ISS1_ARATH
sapria_himalayana_SHI10567-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
sapria_himalayana_SHI13901-RA Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
sapria_himalayana_SHI23516-RA Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO