PlantSME Plant secondary metabolism enzyme database

Scurrula parasitica var. graciliflora (scurrula_parasitica_var_graciliflora)

Imported from atlas release summary for Scurrula parasitica var. graciliflora.

705
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.08% Alkaloid pathway 23.83% Phenylpropanoid pathway 18.87% Flavonoid pathway 12.77% Rosmarinic acid pathway 7.8% Steroid pathway 7.66%
Family Distribution
BAHD 6.87% C3'H/CYP98A 5.11% C4H 4.58% 4CL 4.4% POD 3.93% UGT 3.41% 7DLGT 3.23% UFGT 3.17%
Other Families 65.3%
More Families (94)
CYP76 52 3.05% NMT 50 2.94% IFS 50 2.94% STR 45 2.64% T3O 44 2.58% F3H 43 2.52% DWF4/CYP90B1 40 2.35% CAD 39 2.29% F3'H/CYP75B 35 2.06% SMT1/SMT2/SMT3 33 1.94% CODM/T6ODM 32 1.88% IFR 31 1.82% TRI/TRII 28 1.64% CAS 27 1.59% CYP71 26 1.53% CSE 25 1.47% GS 21 1.23% PYKS 19 1.12% LAC 19 1.12% BR6OX2/CYP85A2 19 1.12% CYP90D1 18 1.06% GES 17 1.0% TPS 17 1.0% H6H 15 0.88% RAS 15 0.88% ANR 14 0.82% G8O/G8H 13 0.76% PMT 11 0.65% T16H 11 0.65% IO 10 0.59% BBE 10 0.59% SGD 10 0.59% CCR 10 0.59% FPPS 10 0.59% AACT 10 0.59% SLS 9 0.53% PAL 9 0.53% HCT 9 0.53% 8HGO 8 0.47% 7DLH 8 0.47% CNMT 8 0.47% DFR 8 0.47% F5H/CYP84A 8 0.47% TAT 8 0.47% CPR 8 0.47% COMT 7 0.41% CPD/CYP90A1 7 0.41% SQS/FDFT1 7 0.41% ISY 6 0.35% COR 6 0.35% ANS/LDOX 6 0.35% HPPR 6 0.35% ROT3/CYP90C1 6 0.35% BR6OX1/CYP85A1 6 0.35% SQE 6 0.35% NCS 5 0.29% FNS 5 0.29% CHS 5 0.29% CYP51G1 5 0.29% F3'5'H/CYP75A 4 0.23% SMO1/SMO2 4 0.23% GGPPS 4 0.23% PMK 4 0.23% CYP719 3 0.18% MPO 3 0.18% LAMT 3 0.18% 16OMT 3 0.18% DET2 3 0.18% HMGR 3 0.18% MVK 3 0.18% IDI 3 0.18% MVD 3 0.18% CMK/IspE 3 0.18% TDC 2 0.12% TYDC_DDC 2 0.12% ODC 2 0.12% CHI 2 0.12% CCoAOMT 2 0.12% HDS/IspG 2 0.12% DXS 2 0.12% HDR/IspH 2 0.12% DXR 2 0.12% HMGS 2 0.12% ADC 1 0.06% CYP80B1 1 0.06% 6OMT_4OMT_SOMT 1 0.06% HYD1 1 0.06% FK 1 0.06% DWF5 1 0.06% DWF1 1 0.06% CPI1 1 0.06% DWF7 1 0.06% MCT/IspD 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 205 19 BAHD (85) View species results
Alkaloid pathway 168 19 NMT (34) View species results
Phenylpropanoid pathway 133 11 POD (54) View species results
Flavonoid pathway 90 9 UFGT (51) View species results
Rosmarinic acid pathway 55 7 C4H (23) View species results
Steroid pathway 54 12 CAS (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 540 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 141 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
scurrula_parasitica_var._graciliflora_SPA26258 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
scurrula_parasitica_var._graciliflora_SPA26332 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
scurrula_parasitica_var._graciliflora_SPA26505 Phenylpropanoid POD medium pass POD__00020__sp_Q9FE01_APX2_ORYSJ