PlantSME Plant secondary metabolism enzyme database

Setaria italica (setaria_italica)

Imported from atlas release summary for Setaria italica.

2421
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.56% Alkaloid pathway 22.76% Phenylpropanoid pathway 20.45% Flavonoid pathway 14.75% Rosmarinic acid pathway 8.8% Steroid pathway 6.69%
Family Distribution
C3'H/CYP98A 6.34% C4H 6.13% BAHD 5.4% UGT 4.36% POD 4.2% 7DLGT 4.13% UFGT 4.13% T3O 3.53%
Other Families 61.77%
More Families (98)
IFS 187 3.25% CYP76 175 3.04% 4CL 174 3.02% F3H 147 2.55% F3'H/CYP75B 147 2.55% DWF4/CYP90B1 132 2.29% BR6OX2/CYP85A2 128 2.22% NMT 120 2.08% CYP71 113 1.96% CAS 110 1.91% STR 102 1.77% SMT1/SMT2/SMT3 93 1.62% H6H 81 1.41% LAC 80 1.39% CAD 74 1.29% SLS 64 1.11% CODM/T6ODM 63 1.09% TRI/TRII 63 1.09% TPS 62 1.08% GES 61 1.06% CCR 61 1.06% PYKS 54 0.94% ANR 54 0.94% RAS 53 0.92% G8O/G8H 51 0.89% SGD 50 0.87% IFR 48 0.83% PMT 46 0.8% CSE 45 0.78% COMT 44 0.76% HCT 43 0.75% CPD/CYP90A1 43 0.75% T16H 41 0.71% F3'5'H/CYP75A 38 0.66% CYP90D1 38 0.66% 16OMT 35 0.61% NCS 35 0.61% COR 31 0.54% GS 31 0.54% FNS 31 0.54% PAL 30 0.52% DFR 26 0.45% CHS 24 0.42% CYP51G1 23 0.4% IO 21 0.36% TAT 21 0.36% BR6OX1/CYP85A1 21 0.36% F5H/CYP84A 19 0.33% BBE 18 0.31% 8HGO 17 0.3% CNMT 16 0.28% TYDC_DDC 15 0.26% FPPS 15 0.26% LAMT 14 0.24% 7DLH 13 0.23% CPR 12 0.21% AACT 12 0.21% GGPPS 12 0.21% ROT3/CYP90C1 10 0.17% ANS/LDOX 9 0.16% CCoAOMT 9 0.16% DWF1 9 0.16% GPPS 9 0.16% CYP719 8 0.14% HPPR 8 0.14% SMO1/SMO2 8 0.14% MVD 8 0.14% CYP80B1 7 0.12% SQS/FDFT1 6 0.1% HMGR 6 0.1% TDC 5 0.09% XMT_MXMT_DXMT 5 0.09% CHI 5 0.09% DET2 5 0.09% HYD1 5 0.09% MVK 5 0.09% MPO 4 0.07% ADC 4 0.07% 6OMT_4OMT_SOMT 4 0.07% ISY 4 0.07% DXS 4 0.07% IDI 4 0.07% HMGS 3 0.05% MCT/IspD 3 0.05% CYP80F1 2 0.03% ODC 2 0.03% FLS 2 0.03% FK 2 0.03% DWF7 2 0.03% MDS/IspF 2 0.03% CMK/IspE 2 0.03% HDR/IspH 2 0.03% DWF5 1 0.02% CPI1 1 0.02% SQE 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 643 20 UGT (237) View species results
Alkaloid pathway 551 21 7DLGT (128) View species results
Phenylpropanoid pathway 495 11 POD (235) View species results
Flavonoid pathway 357 13 UFGT (227) View species results
Rosmarinic acid pathway 213 7 C4H (103) View species results
Steroid pathway 162 12 CAS (85) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2202 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 407 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Sitascaffold_90339470.1 Alkaloid PYKS low borderline
Sitascaffold_90339470.2 Alkaloid PYKS low borderline
Sitascaffold_90339470.3 Alkaloid PYKS low borderline
Sitascaffold_90340800.1 Alkaloid PYKS low borderline