Setaria italica (setaria_italica)
Imported from atlas release summary for Setaria italica.
2421
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2421
Candidate Genes
C3'H/CYP98A
6.34%
C4H
6.13%
BAHD
5.4%
UGT
4.36%
POD
4.2%
7DLGT
4.13%
UFGT
4.13%
T3O
3.53%
Other Families
61.77%
More Families (98)
IFS
187
3.25%
CYP76
175
3.04%
4CL
174
3.02%
F3H
147
2.55%
F3'H/CYP75B
147
2.55%
DWF4/CYP90B1
132
2.29%
BR6OX2/CYP85A2
128
2.22%
NMT
120
2.08%
CYP71
113
1.96%
CAS
110
1.91%
STR
102
1.77%
SMT1/SMT2/SMT3
93
1.62%
H6H
81
1.41%
LAC
80
1.39%
CAD
74
1.29%
SLS
64
1.11%
CODM/T6ODM
63
1.09%
TRI/TRII
63
1.09%
TPS
62
1.08%
GES
61
1.06%
CCR
61
1.06%
PYKS
54
0.94%
ANR
54
0.94%
RAS
53
0.92%
G8O/G8H
51
0.89%
SGD
50
0.87%
IFR
48
0.83%
PMT
46
0.8%
CSE
45
0.78%
COMT
44
0.76%
HCT
43
0.75%
CPD/CYP90A1
43
0.75%
T16H
41
0.71%
F3'5'H/CYP75A
38
0.66%
CYP90D1
38
0.66%
16OMT
35
0.61%
NCS
35
0.61%
COR
31
0.54%
GS
31
0.54%
FNS
31
0.54%
PAL
30
0.52%
DFR
26
0.45%
CHS
24
0.42%
CYP51G1
23
0.4%
IO
21
0.36%
TAT
21
0.36%
BR6OX1/CYP85A1
21
0.36%
F5H/CYP84A
19
0.33%
BBE
18
0.31%
8HGO
17
0.3%
CNMT
16
0.28%
TYDC_DDC
15
0.26%
FPPS
15
0.26%
LAMT
14
0.24%
7DLH
13
0.23%
CPR
12
0.21%
AACT
12
0.21%
GGPPS
12
0.21%
ROT3/CYP90C1
10
0.17%
ANS/LDOX
9
0.16%
CCoAOMT
9
0.16%
DWF1
9
0.16%
GPPS
9
0.16%
CYP719
8
0.14%
HPPR
8
0.14%
SMO1/SMO2
8
0.14%
MVD
8
0.14%
CYP80B1
7
0.12%
SQS/FDFT1
6
0.1%
HMGR
6
0.1%
TDC
5
0.09%
XMT_MXMT_DXMT
5
0.09%
CHI
5
0.09%
DET2
5
0.09%
HYD1
5
0.09%
MVK
5
0.09%
MPO
4
0.07%
ADC
4
0.07%
6OMT_4OMT_SOMT
4
0.07%
ISY
4
0.07%
DXS
4
0.07%
IDI
4
0.07%
HMGS
3
0.05%
MCT/IspD
3
0.05%
CYP80F1
2
0.03%
ODC
2
0.03%
FLS
2
0.03%
FK
2
0.03%
DWF7
2
0.03%
MDS/IspF
2
0.03%
CMK/IspE
2
0.03%
HDR/IspH
2
0.03%
DWF5
1
0.02%
CPI1
1
0.02%
SQE
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 643 | 20 | UGT (237) | View species results |
| Alkaloid pathway | 551 | 21 | 7DLGT (128) | View species results |
| Phenylpropanoid pathway | 495 | 11 | POD (235) | View species results |
| Flavonoid pathway | 357 | 13 | UFGT (227) | View species results |
| Rosmarinic acid pathway | 213 | 7 | C4H (103) | View species results |
| Steroid pathway | 162 | 12 | CAS (85) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2202 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 407 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sitascaffold_50193160.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_50195720.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_60207780.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_60208000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_60210030.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_60210040.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_60210080.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_60210110.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_60210340.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_60212940.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_60226520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70231940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70231940.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70231940.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70232270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70233570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70233570.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70233570.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70233580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70233580.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70233580.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70233580.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70246340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_70251240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_70260470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_70260470.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_80265030.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_80265030.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_80267920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_80270560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_80270560.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_90287810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90296770.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_90306470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90306470.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90306480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90308450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90311630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90316010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90316010.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90318120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90318120.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90318120.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90321580.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_90326940.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_90328280.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_90328510.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_90328530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sitascaffold_90332420.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sitascaffold_90332440.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |