Setaria italica (setaria_italica)
Imported from atlas release summary for Setaria italica.
2704
Candidate Protein Records
2421
Pathway-Level Records
5757
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5757
Family-Level Calls
C3'H/CYP98A
6.34%
C4H
6.13%
BAHD
5.4%
UGT
4.36%
POD
4.2%
7DLGT
4.13%
UFGT
4.13%
T3O
3.53%
Other Families
61.77%
More Families (98)
IFS
187
3.25%
CYP76
175
3.04%
4CL
174
3.02%
F3H
147
2.55%
F3'H/CYP75B
147
2.55%
DWF4/CYP90B1
132
2.29%
BR6OX2/CYP85A2
128
2.22%
NMT
120
2.08%
CYP71
113
1.96%
CAS
110
1.91%
STR
102
1.77%
SMT1/SMT2/SMT3
93
1.62%
H6H
81
1.41%
LAC
80
1.39%
CAD
74
1.29%
SLS
64
1.11%
CODM/T6ODM
63
1.09%
TRI/TRII
63
1.09%
TPS
62
1.08%
GES
61
1.06%
CCR
61
1.06%
PYKS
54
0.94%
ANR
54
0.94%
RAS
53
0.92%
G8O/G8H
51
0.89%
SGD
50
0.87%
IFR
48
0.83%
PMT
46
0.8%
CSE
45
0.78%
COMT
44
0.76%
HCT
43
0.75%
CPD/CYP90A1
43
0.75%
T16H
41
0.71%
F3'5'H/CYP75A
38
0.66%
CYP90D1
38
0.66%
16OMT
35
0.61%
NCS
35
0.61%
COR
31
0.54%
GS
31
0.54%
FNS
31
0.54%
PAL
30
0.52%
DFR
26
0.45%
CHS
24
0.42%
CYP51G1
23
0.4%
IO
21
0.36%
TAT
21
0.36%
BR6OX1/CYP85A1
21
0.36%
F5H/CYP84A
19
0.33%
BBE
18
0.31%
8HGO
17
0.3%
CNMT
16
0.28%
TYDC_DDC
15
0.26%
FPPS
15
0.26%
LAMT
14
0.24%
7DLH
13
0.23%
CPR
12
0.21%
AACT
12
0.21%
GGPPS
12
0.21%
ROT3/CYP90C1
10
0.17%
ANS/LDOX
9
0.16%
CCoAOMT
9
0.16%
DWF1
9
0.16%
GPPS
9
0.16%
CYP719
8
0.14%
HPPR
8
0.14%
SMO1/SMO2
8
0.14%
MVD
8
0.14%
CYP80B1
7
0.12%
SQS/FDFT1
6
0.1%
HMGR
6
0.1%
TDC
5
0.09%
XMT_MXMT_DXMT
5
0.09%
CHI
5
0.09%
DET2
5
0.09%
HYD1
5
0.09%
MVK
5
0.09%
MPO
4
0.07%
ADC
4
0.07%
6OMT_4OMT_SOMT
4
0.07%
ISY
4
0.07%
DXS
4
0.07%
IDI
4
0.07%
HMGS
3
0.05%
MCT/IspD
3
0.05%
CYP80F1
2
0.03%
ODC
2
0.03%
FLS
2
0.03%
FK
2
0.03%
DWF7
2
0.03%
MDS/IspF
2
0.03%
CMK/IspE
2
0.03%
HDR/IspH
2
0.03%
DWF5
1
0.02%
CPI1
1
0.02%
SQE
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 643 | 20 | UGT (237) | View species results |
| Alkaloid pathway | 551 | 21 | 7DLGT (128) | View species results |
| Phenylpropanoid pathway | 495 | 11 | POD (235) | View species results |
| Flavonoid pathway | 357 | 13 | UFGT (227) | View species results |
| Rosmarinic acid pathway | 213 | 7 | C4H (103) | View species results |
| Steroid pathway | 162 | 12 | CAS (85) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2202 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 407 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Sitascaffold_10015530.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_10015760.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_10016490.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_10016590.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_10016610.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_10021300.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_10025300.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_10026060.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_10028810.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_10036730.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_110038620.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20041510.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20044290.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20044300.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20044310.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20050360.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20051180.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20051180.2 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20051180.3 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20051180.4 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20051180.5 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20054490.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20055000.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20055010.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20055020.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20055020.2 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20057990.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20058710.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20059740.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20059770.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20060320.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20060530.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20062350.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20062360.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20062360.2 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20062370.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20062380.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20062390.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20062400.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20062860.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20068810.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20068880.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20071390.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20076060.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20076780.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20076790.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20078630.1 | Rosmarinic Acid | C4H | medium | pass |
| Sitascaffold_20080860.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20080870.1 | Rosmarinic Acid | C4H | low | borderline |
| Sitascaffold_20080880.1 | Rosmarinic Acid | C4H | low | borderline |