PlantSME Plant secondary metabolism enzyme database

Solanum stenotomum (solanum_stenotomum)

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Imported from atlas release summary for Solanum stenotomum.

2568
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.97% Alkaloid pathway 22.51% Phenylpropanoid pathway 18.69% Flavonoid pathway 14.45% Rosmarinic acid pathway 9.38% Steroid pathway 6.0%
Family Distribution
C3'H/CYP98A 6.77% C4H 6.66% BAHD 4.67% UGT 4.62% UFGT 4.54% 7DLGT 4.45% T3O 4.0% IFS 3.81%
Other Families 60.48%
More Families (98)
CYP76 234 3.63% POD 213 3.3% F3H 190 2.94% 4CL 183 2.84% DWF4/CYP90B1 172 2.67% BR6OX2/CYP85A2 167 2.59% F3'H/CYP75B 165 2.56% NMT 143 2.22% CYP71 124 1.92% CODM/T6ODM 117 1.81% STR 87 1.35% CAD 86 1.33% TRI/TRII 85 1.32% H6H 82 1.27% SMT1/SMT2/SMT3 81 1.26% CAS 80 1.24% SGD 75 1.16% 7DLH 69 1.07% TAT 69 1.07% GES 66 1.02% TPS 66 1.02% IFR 59 0.91% PAL 54 0.84% LAC 54 0.84% CSE 51 0.79% GS 49 0.76% COMT 48 0.74% IO 45 0.7% SLS 43 0.67% CYP90D1 40 0.62% PYKS 39 0.6% T16H 39 0.6% 16OMT 39 0.6% F3'5'H/CYP75A 37 0.57% HCT 36 0.56% ANR 34 0.53% CCR 33 0.51% LAMT 32 0.5% RAS 31 0.48% CYP51G1 30 0.46% F5H/CYP84A 29 0.45% CPD/CYP90A1 28 0.43% G8O/G8H 27 0.42% BBE 27 0.42% FNS 27 0.42% NCS 25 0.39% TYDC_DDC 24 0.37% PMT 22 0.34% FPPS 19 0.29% CCoAOMT 18 0.28% BR6OX1/CYP85A1 18 0.28% ANS/LDOX 17 0.26% DFR 17 0.26% CHS 16 0.25% CNMT 15 0.23% ROT3/CYP90C1 15 0.23% SQS/FDFT1 14 0.22% 8HGO 12 0.19% COR 12 0.19% DET2 12 0.19% GGPPS 11 0.17% AACT 11 0.17% MPO 10 0.15% CYP80B1 8 0.12% TDC 8 0.12% CPR 8 0.12% SQE 8 0.12% CYP719 7 0.11% MVD 7 0.11% ISY 6 0.09% HMGR 6 0.09% CHI 5 0.08% HMGS 5 0.08% DXS 5 0.08% PMK 5 0.08% ODC 4 0.06% SMO1/SMO2 4 0.06% DWF1 4 0.06% MVK 4 0.06% XMT_MXMT_DXMT 3 0.05% 6OMT_4OMT_SOMT 3 0.05% HPPR 3 0.05% DWF7 3 0.05% HDS/IspG 3 0.05% ADC 2 0.03% HYD1 2 0.03% FK 2 0.03% DWF5 2 0.03% IDI 2 0.03% CMK/IspE 2 0.03% CYP80F1 1 0.02% FLS 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% GPPS 1 0.02% DXR 1 0.02% MCT/IspD 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 744 19 UGT (283) View species results
Alkaloid pathway 578 22 7DLGT (118) View species results
Phenylpropanoid pathway 480 11 POD (210) View species results
Flavonoid pathway 371 12 UFGT (274) View species results
Rosmarinic acid pathway 241 7 C4H (125) View species results
Steroid pathway 154 13 CAS (65) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2669 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 368 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
solanum_stenotomum_XP_049411878.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
solanum_stenotomum_XP_049412256.1 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
solanum_stenotomum_XP_049413304.1 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
solanum_stenotomum_XP_049414374.1 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH